RNA id: TCONS_00047591


Basic Information

Item Value
RNA id TCONS_00047591
length 1150
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_023968
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 14870043 ~ 14899109 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACGCTCATGACAGCTCGTTAAAAAGTGGAGAAATCGTTTAATGTTCGGTTAGTCAGCTCGACAGTTCTCTTGTTATATACTTTCATACGGATTATGGCAGATTATAACGCTCCACAAAAAGACTGGTACTTAATACTTGGAGCCTGTCCAACAGATGACTTACAAGTGCTGAAACAGAAGTATCAGAAACTTGTCCTCATGTTTCACCCAGACAAGCAGAGGCCAGACGTTTCAGAAGAGGAAGCGGAGCAGCACCTGCAGCGATTCATTGACATCGACCAAGCTTGGAAGATCTTAAGTAATGAGGAGAGCAGGAACGAGTACAATTTGCAGTTACGGGCATGTGAGCTCAAACAGAGCTGGCCAGTGGATGCTCATATAACACTTGATGACATGAACTGGGATTATGaaacggaATGTTACTCGTACACCTGCCGATGTGGAGGAGAATTCATCTTAGAAAAAGACGAAACCCAAGAAGTGGAAACCGTTGTGTGCTGTGACTCCTGTTCGCTCAGCATTGAAGTAAAGAAGGGTACCTGACACTTTGGATGCTTTCGATTAGTTTCTTAATGGACTGAGATTTAACTCTTCTAAAAATGGGGCAAATTCAATAGACTCATGATTGATTTGAACAAAGCCTCATATCTGAGTTTGTCACCTTtcagatattatttattttgtttttattgtccaCCGAAATAGTTTGCATGATAGCAGGAACTGTCTATTTTCATCGGGAGGTTTCAATTTTCAcagattaaatattttaacatcaacatttatttcctagtattaatatttaagtattttgtaCAGATCAAAACCATTTCTTGTAgaagaaaacagcatatttcatttcgTTCACATGTACCTTACAGCAAGTGCATCACCAAATAACCAGAATTGGGTCACGCTAGACTCTCACTGTCTCAGAAAGCCCTTTGGTTGTTTCCTCTGAGCTAGACGTGCTCTTTTACGGACCAGACGTTtatgaaaagaagaaaaaaaaaacatgctgttcGTTCTCCAGCCCCCTCCTTTCACCCCCCGCCTCCTTGTGTTTGTGAGGACCAGGCGGCTCAGTAACCTCTTAGCTCTTGTTAACTTTGTTTGCatgtaaataaatgcagttttttccCTCCTCC

Function

GO:

id name namespace
GO:0032781 positive regulation of ATPase activity biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008198 ferrous iron binding molecular_function
GO:0001671 ATPase activator activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-040426-1153 Predicted to enable ATPase activator activity and ferrous iron binding activity. Predicted to be involved in positive regulation of ATPase activity. Orthologous to human DNAJC24 (DnaJ heat shock protein family (Hsp40) member C24).

Ensembl:

ensembl_id ENSDART00000171835

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047584 lncRNA upstream 437069 14431539 ~ 14433008 (+) True XLOC_023964
TCONS_00047567 lncRNA upstream 1244354 13619831 ~ 13625723 (+) False XLOC_023953
TCONS_00049205 lncRNA upstream 1244354 13620552 ~ 13625723 (+) False XLOC_023953
TCONS_00049206 lncRNA upstream 1244354 13621560 ~ 13625723 (+) False XLOC_023953
TCONS_00049204 lncRNA upstream 1307263 13558992 ~ 13562814 (+) True XLOC_023952
TCONS_00049207 lncRNA downstream 33568 14931982 ~ 14951172 (+) False XLOC_023969
TCONS_00049030 lncRNA downstream 35903 14934317 ~ 14934716 (+) False XLOC_023969
TCONS_00049031 lncRNA downstream 35903 14934317 ~ 14951262 (+) False XLOC_023969
TCONS_00049208 lncRNA downstream 35958 14934372 ~ 14951172 (+) False XLOC_023969
TCONS_00049209 lncRNA downstream 35958 14934372 ~ 15034584 (+) False XLOC_023969
TCONS_00047589 mRNA upstream 130795 14697247 ~ 14739282 (+) True XLOC_023967
TCONS_00047587 mRNA upstream 131019 14694876 ~ 14739058 (+) False XLOC_023967
TCONS_00047588 mRNA upstream 131652 14694914 ~ 14738425 (+) False XLOC_023967
TCONS_00047585 mRNA upstream 359595 14507567 ~ 14510482 (+) True XLOC_023965
TCONS_00047583 mRNA upstream 463589 14400704 ~ 14406488 (+) True XLOC_023963
TCONS_00047596 mRNA downstream 374956 15273370 ~ 15285590 (+) True XLOC_023974
TCONS_00047597 mRNA downstream 388622 15287036 ~ 15351444 (+) True XLOC_023975
TCONS_00047598 mRNA downstream 455681 15354095 ~ 15482419 (+) True XLOC_023976
TCONS_00047601 mRNA downstream 749336 15647750 ~ 15800834 (+) False XLOC_023981
TCONS_00047602 mRNA downstream 749579 15647993 ~ 15800831 (+) False XLOC_023981
TCONS_00047586 other upstream 185730 14684233 ~ 14684347 (+) True XLOC_023966
TCONS_00047580 other upstream 735373 14134590 ~ 14134704 (+) True XLOC_023961
TCONS_00047574 other upstream 1070224 13799157 ~ 13799853 (+) True XLOC_023957
TCONS_00047563 other upstream 1588411 13281610 ~ 13281666 (+) True XLOC_023948
TCONS_00047558 other upstream 1673335 13196626 ~ 13196742 (+) True XLOC_023943
TCONS_00047592 other downstream 42374 14940788 ~ 14940902 (+) True XLOC_023969
TCONS_00047593 other downstream 221183 15119597 ~ 15119730 (+) True XLOC_023971
TCONS_00047594 other downstream 236188 15134602 ~ 15134718 (+) True XLOC_023972
TCONS_00047595 other downstream 319410 15217824 ~ 15218109 (+) True XLOC_023973
TCONS_00047599 other downstream 589080 15487494 ~ 15489644 (+) True XLOC_023978

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000115_01374484_01382727.mRNA True 1302 mRNA 0.45 5 CI01000115 1374484 ~ 1383335 (+)