XLOC_025155 (cnn1b)


Basic Information

Item Value
gene id XLOC_025155
gene name cnn1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14463941 ~ 14486959 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049691
CCTTCCCCACATGATCGGACAGTCGGACCGGAGATTCCAGATCTAACATTATATCGCCGCCCTCTCGTCTGAATCACGATGTCAACGCAGTTCAAGAGCGGACCTGCTTTCGGACTGTCCGCGGAGGTCAAGAGTAAGCTGGCCCACAAGTATGACCCACAAAAGGAGGAGGAGCTGAGGATGTGGATCAGTGATGTCACAGGCCGCAAACTTCCAGAGAACTTCATGGAGGGCCTGAAAGATGGAGTCCTGCTGTGCGAGCTCATCAACACTCTTCAACCCGGTTCTGTAAGAAAGATCAACAACTCTCCTCAAAACTGGCATCAGCTGGAAAATATTGGTAATTTTGTCCGAGCCATTCAAGAGTATGGACTGAAGCCACATGAAATATTTGAGGCCAACGACCTGTTTGAGAACGTCAATCACACTCAGGTCCAGAGCACGCTTATTGCACTGGCTGGAATGGCTAAATCGAAAGGCTTTCATTCGAAGTACGACATCGGAGTGAAATACGCAGAGAAACAGCAGCGCAGATTTGCTCCTGAAAAACTAAAGGAGGGACGAAATATTATTGGTTTGCAGATGGGAACCAATAAGTTTGCCAGTCAAAAAGGCATGACATCTTACGGCACACGGCGTCACCTATACGACCCTAAGACCGGTATGGAAAATCCTCTAGATCAATCGACAATCAGCCTGCAGATGGGCACCAACAAAGGAGCCAGTCAGGCTGGTATGACAGCTCCAGGCACCAAGCGGCAAATCTTCGAGAAGAAGCTGGACATGGAGATGTGCGACACTTCTATCGTCTCGCTGCAGATGGGAACCAACAAGGTTGCGTCCCAGACCGGGATGACGGTGTACGGCCTGCCGCGTCAAGTGTACGACAGCAAGTACTGCTCCAGCGCCAATGAATACATCAACAACGGCCAGGACTCAGAGATGGATGGATATCAGTACTCCGACTAGGATGAACAGCCGGCACactactttttgtttttttaattcacctGCACTTTTGATATTCCAGATTCATGTCGACAAGTAGGACCAGCTTTAAATGTTTACCGCCACCACAGC

Function

symbol description
cnn1b Predicted to enable actin binding activity. Predicted to act upstream of or within actomyosin structure organization. Predicted to be active in cytoskeleton. Orthologous to human CNN1 (calponin 1).

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0005516 calmodulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-54 Predicted to enable actin binding activity. Predicted to act upstream of or within actomyosin structure organization. Predicted to be active in cytoskeleton. Orthologous to human CNN1 (calponin 1).

Ensembl:

ensembl_id ENSDARG00000102398

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049691 True 1080 mRNA 0.49 7 14463941 14486959

Neighbor

gene id symbol gene type direction distance location
XLOC_025153 tlcd4b coding upstream 11616 14388010 ~ 14452325 (+)
XLOC_025154 CU639471.1 coding upstream 64289 14399225 ~ 14399652 (+)
XLOC_025152 plppr2a coding upstream 90776 14317802 ~ 14373165 (+)
XLOC_025151 NA coding upstream 176100 14277650 ~ 14287841 (+)
XLOC_025150 si:ch211-108d22.1 coding upstream 203144 14259115 ~ 14260797 (+)
XLOC_025156 tmem205 coding downstream 12116 14499075 ~ 14508761 (+)
XLOC_025157 rab3db coding downstream 25711 14512670 ~ 14537576 (+)
XLOC_025158 epor coding downstream 56994 14543953 ~ 14561096 (+)
XLOC_025159 znf653 coding downstream 84854 14571813 ~ 14606118 (+)
XLOC_025160 tspan35 coding downstream 124340 14611299 ~ 14638399 (+)
XLOC_025429 BX649540.1 misc downstream 15761780 30248739 ~ 30249036 (+)
XLOC_025149 NA non-coding upstream 209176 14251244 ~ 14254765 (+)
XLOC_025148 AL954138.2 non-coding upstream 215403 14242119 ~ 14248538 (+)
XLOC_025147 NA non-coding upstream 261422 14201043 ~ 14202519 (+)
XLOC_025164 NA non-coding downstream 742993 15229952 ~ 15231838 (+)
XLOC_025169 NA non-coding downstream 1018225 15505184 ~ 15506157 (+)
XLOC_025170 NA non-coding downstream 1030593 15517552 ~ 15517899 (+)
XLOC_025172 NA non-coding downstream 1131319 15618278 ~ 15621754 (+)
XLOC_025173 NA non-coding downstream 1152493 15639452 ~ 15646667 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000333_00285528_00291478 CNN1, CNN1B coding CI01000333 null 285528 ~ 291789 (+)