Fish Transcriptome and Expression Database

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model fish

XLOC_025234 (CU151886.2)

Basic Information

Item	Value
gene id	XLOC_025234
gene name	CU151886.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	18892650 ~ 18892766 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049838
tgtcacagccatatcaccctgcagcccaagaccggttactctctgaagctaagcaggactgagcctggttcagtacctggatgggagagcacatgggaaaactaggtacttttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108712

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00049838	True	117	rRNA	0.51	1	18892650	18892766

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025233	AL772362.1	coding	upstream	24698	18867835 ~ 18867952 (+)
XLOC_025231	tnpo2	coding	upstream	53121	18807006 ~ 18839529 (+)
XLOC_025230	fahd1	coding	upstream	96091	18795570 ~ 18796559 (+)
XLOC_025229	AL772362.2	coding	upstream	104165	18771528 ~ 18788485 (+)
XLOC_025228	narfl	coding	upstream	122699	18756231 ~ 18769951 (+)
XLOC_025235	CU151886.1	coding	downstream	24695	18917461 ~ 18917583 (+)
XLOC_025236	si:ch211-198m1.1	coding	downstream	43240	18936006 ~ 18967653 (+)
XLOC_025237	rln3a	coding	downstream	314410	19207176 ~ 19210637 (+)
XLOC_025238	il12rb2l	coding	downstream	323801	19216567 ~ 19238394 (+)
XLOC_025239	smarca4a	coding	downstream	353038	19245804 ~ 19282525 (+)
XLOC_025429	BX649540.1	misc	downstream	11355973	30248739 ~ 30249036 (+)
XLOC_025227	NA	non-coding	upstream	220359	18670824 ~ 18672291 (+)
XLOC_025218	NA	non-coding	upstream	695524	18189609 ~ 18197126 (+)
XLOC_025215	NA	non-coding	upstream	830867	18040613 ~ 18061783 (+)
XLOC_025241	BX322663.3	non-coding	downstream	420225	19312991 ~ 19313107 (+)
XLOC_025243	BX322663.1	non-coding	downstream	456953	19349719 ~ 19349817 (+)
XLOC_025248	NA	non-coding	downstream	580197	19472963 ~ 19473197 (+)
XLOC_025257	NA	non-coding	downstream	1166912	20059678 ~ 20064732 (+)

Expression

Co-expression Network