XLOC_026596 (csnk1da)


Basic Information

Item Value
gene id XLOC_026596
gene name csnk1da
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36173203 ~ 36210344 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051812
CCTCTGTTGTAGCAGATACACAGAGTAAATGGTAGATACAGGGCCAGCAGAACTAGGAAGGAGTCGCTCTCAAAATCCGGCTTCATCCTTTtttaaacagagcattttcagTTCGAAACTTACCGGAGCATAAAGTTCACACTTTACTCTTTTTAACGAGCCTAATATTTTGATAGTTACCGGTTCGGAATGTTTGAAAACGACTGGTGAAAATTGGGTAGCTACTGTGAAGGGAATTAGCAAGCTAGCTGGCTGTATAAGGGGATTCTGGCTGGGAGAGACAGAAGAATAGACGGATAACAAAGACGGGATTTCCGCTGTTTTTATTGAACACTCCGAACATACATCGTTTAAATATTTCCAGCTGAAGCTAGCTTAATTGCTAGCTTTCTCGTTTAGCCATTTACCATGGAATTGAGAGTAGGAAACCGATACAGACTGGGAAGAAAAATTGGCTCTGGATCCTTTGGTGACATTTATTTGGGCACAGACATCACCACGGGGGAAGAAGTAGCCATCAAACTAGAATGTGTGAAAACGAAGCACCCGCAGCTGCACATCGAGAGCAAGATCTACAAGATGATGCAAGGAGGCGTTGGCATCCCAACAATCAAATGGTGTGGAGCAGAGGGAGATTACAACGTGATGGTTATGGAGCTTCTCGGTCCCAGTTTGGAGGATCTCTTCAATTTTTGTTCGCGCAAGTTCAGCCTAAAGACTGTTCTTCTGTTGGCTGACCAGATGatCAGCCGTATTGAATACATTCACTCTAAGAACTTCATCCACAGAGATGTCAAGCCTGATAACTTCCTTATGGGCCTTGGGAAGAAGGGCAACCTTGTTTACATCATTGACTTTGGCCTGGCCAAGAAGTACAGAGATGCTCGCACCCACCAGCACATCCCTTACCGCGAGAATAAAAACCTGACCGGCACTGCTCGCTACGCTTCCATCAACACCCACTTGGGAATAGAGCAGTCCAGACGAGATGACTTGGAGTCTCTTGGCTATGTGCTCATGTACTTCAACCTGGGCTCTCTGCCATGGCAGGGTTTGAAAGCTGCCACAAAGAGACAGAAGTACGAGCGAATCAGCGAGAAGAAAATGTCCACTCCTATTGAAGTCCTTTGCAAGGGATACCCATCTGAGTTTGCCACATACCTCAACTTTTGCCGCTCCCTTCGTTTTGACGACAAGCCGGACTACTCTTACCTGAGACAACTTTTCAGAAATCTTTTTCACCGGCAAGGCTTTTCATATGATTACGTGTTTGACTGGAATATGCTCAAATTTGGCGGAGCCAGAGAAGATCCAGAGAGAGATCGGAGGGATCGCGAGGAAAGGATACGGCAAGGGCGAATTCCTCTTCCCCGTGTCATGCTGCCCACAAGCTCAGGTAGACCCAGAGGAACACAAGAAGTAGCACCTGCCCCACCCCTCACGCCAGACTCACACACAGGAATGGAGCGAGAGAGGAAGGTCAGTATGAGATTGCACCGTGGAGCCCCTGTCAACGTTTCCTCCTCTGATCTTACTGGCCGACAGGACTGCTCCCGCATATCCACATCACAGGCTCATTCTCGCGTCCCAAGTGGCCTGCAGTCTGCCGTACCTCGATGAGACCCTCCACACGCCTCAAGAGCAGACCATCCACGGCCCTGATCTGCACAAGGACTCCTCCAGCAGCCTCTAACCATGTGAAATCAAATCCAAGCAGACACTTCATTTCCTCCTTCCTCTCAATGCAATTAAACAACACTTGAGAGTCACGCAAAACTCCAGAGATGGACTGTTTTTGGTTTTCTGTTCTTCTTTTtagcacgcacacacatgcacgcacacatttCCTCACCTACACTACTCAAAAAAAGACACCCGGGCACATCACTTTCTGCCAGTCAATCGCTGACAAGATGGGAGGGACAGGACAGGGTGTCATTTTCGGCCGACGCTGCCTTTGgccctctgaaacacacacatattatagGAGGAGAGGACCGTTCTCCTGCCGTCCAGGGGCTGTTCACAAAAGCAGAGTGTTTTGGCTAAAGCCTGCTCTGATTGCGCAGCGTATCCTCTCTCTTGTTGCAAAAAAATACTTTCACACAGCTTGGAATGCAGCTGTACTGATAGCCATTGACATTTTGCTTTGcgtaacttttttttcttcttgtcttTAAGTTGATGTACATCAGAGATTAAATTGATTTCACACTGGCTACAGTCTTTTGCAGGTGAATCTTCTCCTTTTTTATGTTAGTTTAAGCTGAACATGCAGAATTAAATGGAAAGCCTGTTCGTTCGTGAGGCAGAATGACGGCGGTGTCTTATGTCTTTTCGTAGTTTATTATTTTGAAGTCCAGGCAGAAAAACAACACAGCAAATGGTTTTAGTCGTACACACAGTATCACCTTTGTTTTCTTTTGGCAGCAAACAGCCAGGCCCTCTCTATATCATCTCGCTTCTAGATTTTATTGCATTCCCTTTATGCGTTTTTGTTTGTCAAAAGCTGTGAGATGCCTGTATTGTAGAGTTGTTGATGTTATTAATgtcgtttcttttttttaaccccTGAACTAAGCTTTTACAGTAACGCAGGCACACGGGGTTGAGTCCATGCTGTTGGATGGTGTTGTTTAAAGCAGTTGCGGAAGTCTAATAATGATGAAAAGGGCTTTGTTTTTCTGGCCTGAGGGTGTAAGCGTGAAAGACTCGGGCATGTTGAGACAAACTGGCACCTTTTTCTCTCTTATTTCCTTTTTGTTACgcaaacaaatgtttgtttggaTTTGGAAGTCCAGCTTGTCTCATTGAGAGAACACCAGCCATCATTTAAGCCATGCCTGattttggattattttttttgtctgacaCTTTTAACTATTGAGATGCaaggtatttttgtttgtttgtttgttcgttttccTTTAACTTTATTTACCAATGCTTTTAGTACAACTTTTCCCTTGTTTCAGAAGTGGGGTTCTTTGACTTACTGGTGCTATAAGTCACAGAGGATGTGGACGGCGAGCTGCCTGTCCATATCATTCAGCATAGTAGAGCGTAGGCTTTTTCTGTAGTCATGGGGGTCTGGGGCGGGGGGGGATCTAGTGGTGAAAATCTTCAATTCTGTTGTCATGTATATAGAATGTTTCTAGTGATGGCAAAGTACCATTTTTTCATAGCcacttgtctgtgtgtgtgtgtgtgtatcgtgAGTATGGGAAAAAGGTTAGAGCTTAGAGAGGTGCGAGGGACTTTGTTCCGTTCTAGATTTGATAAGTTAGTACTTCTTTCTCTCCACTGGTGGTCTCACAGAAACAGCCGCTCCAGTACTGGTGGTGTTTAAATGTAGGCACAAGTACACTTTGTCGGGGATCGAGCTATTATGGATTTCTCTTTCATTTTTCTGGTTCATTCTACACGCGACTGCTTGGCCAGTCCTTCTGCATCACACTGTGCTGTATCAGGTGGAATTAAGGAAATCTTCCTTCTCTGGAAGATTTTATTTCCTCATTTGTATTGCcactgtatttgtgtattttaaaatgtgtaaataaattaataagtactTGTAA
>TCONS_00051813
ATGGAATTGAGAGTAGGAAACCGATACAGACTGGGAAGAAAAATTGGCTCTGGATCCTTTGGTGACATTTATTTGGGCACAGACATCACCACGGGGGAAGAAGTAGCCATCAAACTAGAATGTGTGAAAACGAAGCACCCGCAGCTGCACATCGAGAGCAAGATCTACAAGATGATGCAAGGAGGCGTTGGCATCCCAACAATCAAATGGTGTGGAGCAGAGGGAGATTACAACGTGATGGTTATGGAGCTTCTCGGTCCCAGTTTGGAGGATCTCTTCAATTTTTGTTCGCGCAAGTTCAGCCTAAAGACTGTTCTTCTGTTGGCTGACCAGATGatCAGCCGTATTGAATACATTCACTCTAAGAACTTCATCCACAGAGATGTCAAGCCTGATAACTTCCTTATGGGCCTTGGGAAGAAGGGCAACCTTGTTTACATCATTGACTTTGGCCTGGCCAAGAAGTACAGAGATGCTCGCACCCACCAGCACATCCCTTACCGCGAGAATAAAAACCTGACCGGCACTGCTCGCTACGCTTCCATCAACACCCACTTGGGAATAGAGCAGTCCAGACGAGATGACTTGGAGTCTCTTGGCTATGTGCTCATGTACTTCAACCTGGGCTCTCTGCCATGGCAGGGTTTGAAAGCTGCCACAAAGAGACAGAAGTACGAGCGAATCAGCGAGAAGAAAATGTCCACTCCTATTGAAGTCCTTTGCAAGGGATACCCATCTGAGTTTGCCACATACCTCAACTTTTGCCGCTCCCTTCGTTTTGACGACAAGCCGGACTACTCTTACCTGAGACAACTTTTCAGAAATCTTTTTCACCGGCAAGGCTTTTCATATGATTACGTGTTTGACTGGAATATGCTCAAATTTGGCGGAGCCAGAGAAGATCCAGAGAGAGATCGGAGGGATCGCGAGGAAAGGATACGGCAAGGGCGAATTCCTCTTCCCCGTGTCATGCTGCCCACAAGCTCAGGTAGACCCAGAGGAACACAAGAAGTAGCACCTGCCCCACCCCTCACGCCAGACTCACACACAGGAATGGAGCGAGAGAGGAAGGTCAGTATGAGATTGCACCGTGGAGCCCCTGTCAACGTTTCCTCCTCTGATCTTACTGGCCGACAGGACTGCTCCCGCATATCCACATCACAGAATAGCATTCCCTATGAACACCACGGCAAGTAGATGCTCGCCATGTTCTGGTATGAGAGACCGCATTGG

Function

symbol description
csnk1da Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including organelle assembly; positive regulation of canonical Wnt signaling pathway; and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within Wnt signaling pathway and protein phosphorylation. Predicted to be active in cytoplasm; nucleus; and spindle microtubule. Is expressed in several structures, including brain; head; pectoral fin; post-vent region; and tail bud. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome 2. Orthologous to human CSNK1D (casein kinase 1 delta).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:1905515 non-motile cilium assembly biological_process
GO:0042752 regulation of circadian rhythm biological_process
GO:0051225 spindle assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005876 spindle microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-825 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including organelle assembly; positive regulation of canonical Wnt signaling pathway; and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within Wnt signaling pathway and protein phosphorylation. Predicted to be active in cytoplasm; nucleus; and spindle microtubule. Is expressed in several structures, including brain; head; pectoral fin; post-vent region; and tail bud. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome 2. Orthologous to human CSNK1D (casein kinase 1 delta).

Ensembl:

ensembl_id ENSDARG00000008370

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051812 False 3578 mRNA 0.45 9 36173203 36210344
TCONS_00051813 True 1233 mRNA 0.49 9 36180822 36209936

Neighbor

gene id symbol gene type direction distance location
XLOC_026595 BX897685.1 coding downstream 1235 36170943 ~ 36171968 (-)
XLOC_026594 engase coding downstream 19612 36136530 ~ 36153591 (-)
XLOC_026593 coil coding downstream 45969 36119782 ~ 36127234 (-)
XLOC_026592 rab11fip4a coding downstream 57849 36023268 ~ 36115354 (-)
XLOC_026591 suz12a coding downstream 308163 35849392 ~ 35865040 (-)
XLOC_026597 gps1 coding upstream 23716 36234060 ~ 36246975 (-)
XLOC_026598 rac3a coding upstream 38507 36248851 ~ 36260102 (-)
XLOC_026599 prkar1aa coding upstream 52249 36262593 ~ 36272670 (-)
XLOC_026600 NA coding upstream 109895 36320239 ~ 36323625 (-)
XLOC_026601 gna13b coding upstream 122235 36332579 ~ 36364903 (-)
XLOC_026588 NA non-coding downstream 598752 35565128 ~ 35574451 (-)
XLOC_026585 NA non-coding downstream 1225142 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 1531230 34641048 ~ 34641973 (-)
XLOC_026572 NA non-coding downstream 2032022 34139637 ~ 34141181 (-)
XLOC_026558 BX649502.11 non-coding downstream 2086720 34086041 ~ 34086483 (-)
XLOC_026606 NA non-coding upstream 372756 36583100 ~ 36587136 (-)
XLOC_026612 FO744883.1 non-coding upstream 545689 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 743281 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 757527 36967871 ~ 36967993 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_07037314_07046456 CSNK1DB, CSNK1D coding CI01000046 null 7037314 ~ 7046586 (+)