XLOC_026601 (gna13b)


Basic Information

Item Value
gene id XLOC_026601
gene name gna13b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36332579 ~ 36364903 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051822
GTCTCGATGAAGTTGCACAAAGATGGCGTATTTCCTGCAGTCAGGGTCCTTTCTATCCCTTTGTTTTCCAAACTGTTTTCTCGACAGCAGCGATGCGGAACAGCTAAGGAAATCTAAAGAAATAGACCGAGAAATTTTCAAAGAAAAAACCTTTGTGAAACGCCTAGTGAAGATACTTTTGCTCGGCGCCGGAGAGAGCGGCAAGTCCACTTTCCTCAAGCAGATGCGCATCATACACGGGGATGACTTCGATAAGGGGGACAAAGAAGAGTTCAGAGGCACCATTTACAGTAATGTTATGAAAGGTGTTCGAGTGCTTGTGGATGCCAGAGAAAAGCTACATATCCCATGGGGAAACCCTTCAAACCAGACACATGCAGACATCATGATGGCTTTTGACACACGGTCGACCATGGTGTCGCAAGGGATGTTGGAGACCAAATTGTTCCTGCAGTACCTGCCCTCAATCCGTGCCCTCTGGGCCGACATCGGCATACAGCACGCATATGACCGGCGTAGAGAGTTTCAGCTGGGAGAATCTGTGAAGTATTTCTTGGACAACTTGGACAAACTCGGAGCACCGGACTACTTACCAACGCAGCAAGACATTCTGCTGGCACGTAAGCCCACCAAAGGCATTCATGAGTACGACTTTGAGATCAAGAACGTGCCCTTTAAGATGGTGGACGTCGGCGGGCAGAGGTCGGAGCGCCGTCGGTGGTTTGAGTGCTTCGAAAGCGTCACTTCCATCCTCTTCCTGGTCTCGTCCAGCGAGTATGACCAGGTGCTGATGGAGGACCGGCAGACCAACCGTCTCATGGAGTCGCTCAACATCTTCGAGACCATAGTCAACAACCGCGTCTTCAACAACGTTTCCATCATCCTGTTCCTCAACAAGACGGACTTGCTGGAGGAGAAGGTCAAATCAGTGTCCATCCAGGACTATTTCCCCGAGTTCACAGATGATCCATGGTGCCTGGGGGACGTGAAGAACTTCCTGGTGGAGTGTTTCCGAAACAAGCGCCGAGACCAGCAGCAGAAGCCCCTCTACCACCATTTCACCACCGCCATTAACACGGAGAACATTCGCCTGGTCTTCCGTGACGTCAAGGACACCATCTTGCATGACAACCTCAAACAGCTCATGCTGCAGTGATGCCAGTCCAACCGTTTCCTTTCAGATCACTCCAAAAATAACCCTCTTCTGCTCAGATGTTTGTACTCCGCACAGTAACCTTTCTCAATAGCTCTGACTGGCTTTCGTGCGAGGAAGAAGAAGCCCTAGCCTTCTGTCATGAGCATGGGACGGCAGGTAGTTTTTCTCTTAAAAAGCAGGTCTAGAGAAGAGAGTGCGCTCGTCCACTCACACGTGAGTGTCCTGCCAGAGAAGCTGTACATGTCATTGAGCGCCACCCTCTGCCTGAAGGTGCCAAACGCTCCCTCGAATAGAGGACAAAAGCAGGAAGAGATCCTAGCATCTGTTACCTTTGAGCCTTGTATTACTGACCAAATAGCAAGATGAGATGCAAATGCTGTTTTAACCTTTTAACAGGAACCATGTTCTGAGCCTTTCT

Function

symbol description
gna13b Predicted to enable D5 dopamine receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Acts upstream of or within several processes, including circulatory system development; gastrulation; and glial cell development. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in brush border membrane. Is expressed in gill; head; intermediate cell mass of mesoderm; nervous system; and trunk. Orthologous to human GNA13 (G protein subunit alpha 13).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007492 endoderm development biological_process
GO:0009826 unidimensional cell growth biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:0031584 activation of phospholipase D activity biological_process
GO:0001525 angiogenesis biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0060973 cell migration involved in heart development biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0043149 stress fiber assembly biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0003262 endocardial progenitor cell migration to the midline involved in heart field formation biological_process
GO:0048932 myelination of posterior lateral line nerve axons biological_process
GO:0060026 convergent extension biological_process
GO:0007165 signal transduction biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0031526 brush border membrane cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function
GO:0031752 D5 dopamine receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8277 Predicted to enable D5 dopamine receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Acts upstream of or within several processes, including circulatory system development; gastrulation; and glial cell development. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in brush border membrane. Is expressed in gill; head; intermediate cell mass of mesoderm; nervous system; and trunk. Orthologous to human GNA13 (G protein subunit alpha 13).

Ensembl:

ensembl_id ENSDARG00000037924

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051822 True 1574 mRNA 0.50 4 36332579 36364903

Neighbor

gene id symbol gene type direction distance location
XLOC_026600 NA coding downstream 8954 36320239 ~ 36323625 (-)
XLOC_026599 prkar1aa coding downstream 59909 36262593 ~ 36272670 (-)
XLOC_026598 rac3a coding downstream 72477 36248851 ~ 36260102 (-)
XLOC_026597 gps1 coding downstream 85604 36234060 ~ 36246975 (-)
XLOC_026596 csnk1da coding downstream 122235 36173203 ~ 36210344 (-)
XLOC_026602 cog1 coding upstream 36202 36401105 ~ 36420397 (-)
XLOC_026603 rogdi coding upstream 63085 36427988 ~ 36440705 (-)
XLOC_026604 glyr1 coding upstream 76403 36441306 ~ 36458165 (-)
XLOC_026605 ppl coding upstream 94887 36459790 ~ 36481986 (-)
XLOC_026606 NA coding upstream 218197 36583100 ~ 36587136 (-)
XLOC_026588 NA non-coding downstream 758128 35565128 ~ 35574451 (-)
XLOC_026585 NA non-coding downstream 1384518 34947402 ~ 34948061 (-)
XLOC_026580 NA non-coding downstream 1690606 34641048 ~ 34641973 (-)
XLOC_026572 NA non-coding downstream 2191398 34139637 ~ 34141181 (-)
XLOC_026612 FO744883.1 non-coding upstream 391130 36756033 ~ 36756149 (-)
XLOC_026617 NA non-coding upstream 588722 36953625 ~ 36954088 (-)
XLOC_026618 CT573704.1 non-coding upstream 602968 36967871 ~ 36967993 (-)
XLOC_026619 NA non-coding upstream 604500 36969403 ~ 36972222 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_06619452_06652257 GNA13, GNA13.S coding CI01000046 null 6619166 ~ 6652257 (-)
bowfin (Amia calva) AMCG00013191 LOC107721501,LOC107688114,LOC107590387,LOC107601276,LOC107654495 coding CM030125.1 CM030125.1 23917200 ~ 23927578 (-)