G1016991


Basic Information

Item Value
gene id G1016991
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 74688420 ~ 74753450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1156650
TTGTTTTTCCAAAGAAATCGTTTAATAGGTTCCATAAAGCCAAAATTGACACAAAAAATAATGTTGAGGATACAAACAGAAAGTACAAAGGTGGAATGTTACTGGGCAAGAGAACATGAACTTTTCACATGGTTTGGAAATGAATGGCTGACACACGTGGCTAAATTGAAAGACGCTcgagctagctagcaagctaacttaGCTAATTAAACACAGAATAGGACTACAAAAGTCATCCGGTCAACAACAACACGTGGACATTTCTTGAGGAGCGCATCTTTTAAATACAGCCAGCCAAGGGATGATCTTGAATCGGAGTTTTACTCGTGTGCAGCATAACGTTAACTGTTGTAGCTAGCAGTCTCTGTAGGATCCCCGGCCTAGAACGGTCTCCGTAGCCTTCCTGGGCCCAACCTATTGATTGTCCCTGTATCCGCCACCAGAGGAGTACCCGCCTCGGCCTCCACCGCTCCTgtatccaccaccaccaccacctccgtATCCTCGGTCTTCTCCGCCATAGCTGCGGCCTCCTCCGCCACCACCGTAACTCCTCTCGCCTCCACCATATCCACCTCCACCGCCGTATCCACCACCACCTCGGGAACCTCTGTATCCACCGCCACCTCCAcgacctccaccacctccctggCCTGCCTCGTTCACACGGATGGTTCTGCCGTCGAGAGACTGGCCGTTCATTGCATCCATAGCGTCCTTCGCATCCTCGGGATTGTCGTACTTTACGAAGCCGAACCCACGAGGCCTTCCTGTTTCTCtgtccatgatgacatcacatttAGAGATATTTCCATACTTTGAGAACGCTTCTGCAAGAGATTGCTCTGTGGTGTCGAAGCTCAGGCCACCGACGAAAAGTTTTCCTTCGTCGGACATGTTTCTTTgtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaaaaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatttttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagactgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatatttaaagcttgggaaatctttttgtatccaaatccagctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactgtcacagtgcaggtgcatttatacggagacttgattgcacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgctttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1156650 True 1906 lncRNA 0.46 2 74688420 74753450

Neighbor

gene id symbol gene type direction distance location
LOC118937457 NA coding upstream 167374 74519385 ~ 74521046 (+)
spring1 cssa20h12orf49 coding upstream 371839 74312531 ~ 74316581 (+)
LOC110536377 tesc coding upstream 425714 74251421 ~ 74262706 (+)
LOC110536376 fbxo21 coding upstream 437236 74237724 ~ 74251184 (+)
zgc:112294 LOC106579817 coding upstream 677177 74007753 ~ 74011243 (+)
LOC110536385 suds3 coding downstream 124006 74877456 ~ 74888265 (+)
LOC110536386 LOC106579824 coding downstream 400080 75153530 ~ 75274772 (+)
LOC110536389 LOC106579825 coding downstream 529106 75282556 ~ 75294050 (+)
LOC118937399 NA coding downstream 620649 75374099 ~ 75383293 (+)
trnaw-cca-7 NA coding downstream 625310 75378760 ~ 75378831 (+)
G1017006 NA non-coding upstream 31097 74651927 ~ 74657323 (+)
G1016932 NA non-coding upstream 131320 74553587 ~ 74557100 (+)
G1016703 NA non-coding upstream 139822 74466631 ~ 74548598 (+)
G1016709 NA non-coding upstream 215258 74472680 ~ 74473162 (+)
G1016696 NA non-coding upstream 230511 74457600 ~ 74457909 (+)
G1017059 NA non-coding downstream 32408 74785858 ~ 74791532 (+)
G1017300 NA non-coding downstream 137186 74890636 ~ 74891144 (+)
G1017381 NA non-coding downstream 304552 75058002 ~ 75060231 (+)
G1017524 NA non-coding downstream 373296 75126746 ~ 75126986 (+)
G1017529 NA non-coding downstream 382151 75135601 ~ 75136103 (+)
LOC110535110 LOC106579812 other upstream 1519978 73155366 ~ 73254792 (+)
G1014834 NA other upstream 1927475 72760521 ~ 72760945 (+)
G1013922 NA other upstream 2808748 71879296 ~ 71879672 (+)
G1013617 NA other upstream 2847950 71838302 ~ 71840882 (+)
LOC110536353 LOC106580623 other upstream 2891105 71738585 ~ 71797315 (+)
G1017593 NA other downstream 546888 75269723 ~ 75328737 (+)
LOC110536406 LOC106570821 other downstream 1735058 76396096 ~ 76600566 (+)
G1018678 NA other downstream 1770688 76524138 ~ 76525567 (+)
G1019189 ptar1 other downstream 2065055 76818505 ~ 76821968 (+)
mamdc2a LOC106570826 other downstream 2136277 76889699 ~ 76939449 (+)

Expression


Co-expression Network