LOC110537940 (LOC106600765)


Basic Information

Item Value
gene id LOC110537940
gene name LOC106600765
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 62392443 ~ 62398300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624416.2
CGGTCCGCTTGGAACAATAAATAGAGCGAACAAGGCTCCTTCCAGTTCACAACTCTGGGAAGACGCATGAAGAACTTCTTGCTTCAACAGTGATTGAACGGAACTCTTCTGCCCGCCTCCCGCGCGATATAACATTCCGGATTGATAACGTAATAATTACTTTAACTGTTTTAGTAAAATAATCTAAGAATCTCTATATTTGTACCGTTCATTTTGATATAAAATGAAAATGGAGTCTCAGGTCCGCCAGCACTATCACCACGATTGCGAAGTTGCAATCAACCGGATGATCAACATGGAGATGTTTGCCTCCTATACTTACACTTCAATGGCTTTCTATTTCTCCCGTGACGATGTGGCTCTGCCTGGCTTCGCGCATTTCTTCAAGGAGAACAGCGACGAGGAGCTGGAGCACGCCGACAAGCTACTCTCCTTCCAGAACAAGAGAGGTGGACGCATTTTACTCCAGGACATCAAGAAGCCAGAACGTGATGAGTGGGGCAATGGGCTGGAGGCCATGCAGTGTGCTCTGCAGCTGGAGAAGAATGTGAACCAGGCCCTGCTGGACCTGCACAAGATTGCCTCTGACAAGGTTGACCCACATCTGTGTGACTTCCTGGAGACCCATTACCTGAATGAGCAGGTGGAGGCCATTAAGAAGCTGGGAGACCACATCACCAACCTCACCAAGATGGATGCTGTCAAAAACAAGATGGCAGAGTACCTGTTTGACAAGCACACCCTGGGAGGCCAGAGCTAAACTACTTCCATTCCCAGGCTACGGCCTCATGCCTCAGACCCAGGAATCCTGGCTTCTCTGATAGATCCTACAGGCTTTACATTTATAGGGAGGGGAGTGTTAAACTGGTGCAGTGCAACACCGCTATAACATTGAGGTGTTTATGTTGACGACACTACTGTATTTTGGAGACAAGACATCTTGTAAAACAATTAAAAAGATCGCTGAAGTTTGATGTTTTCTAAGTGTT

Function

NR:

description
ferritin, middle subunit-like

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006826 iron ion transport biological_process
GO:0008199 ferric iron binding molecular_function
GO:0004322 ferroxidase activity molecular_function

KEGG:

id description
K02217 ftnA, ftn; ferritin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624416.2 True 989 mRNA 0.47 4 62392443 62398300

Neighbor

gene id symbol gene type direction distance location
aldh16a1 aldh16a1 coding upstream 26929 62350796 ~ 62365514 (+)
kcnc3a LOC106600760 coding upstream 49504 62238004 ~ 62342939 (+)
zgc:193811 LOC106600757 coding upstream 187150 62201350 ~ 62205293 (+)
LOC110537935 LOC106600756 coding upstream 206477 62170639 ~ 62185966 (+)
doc2a LOC106600746 coding upstream 389357 61952290 ~ 62003086 (+)
LOC110537942 LOC106600765 coding downstream 4389 62402689 ~ 62410184 (+)
LOC110515900 LOC100136295 coding downstream 35420 62433720 ~ 62443344 (+)
LOC100136295 LOC100136295 coding downstream 41967 62440267 ~ 62442153 (+)
LOC118937701 LOC100136295 coding downstream 48141 62441706 ~ 62448515 (+)
LOC110537949 LOC100136295 coding downstream 54419 62452719 ~ 62454817 (+)
G1096142 NA non-coding upstream 16740 62375451 ~ 62375703 (+)
G1096141 NA non-coding upstream 17906 62374184 ~ 62374537 (+)
G1096120 NA non-coding upstream 18690 62373184 ~ 62373753 (+)
G1096139 LOC106567613 non-coding upstream 21145 62371074 ~ 62371298 (+)
G1096159 NA non-coding downstream 17744 62416044 ~ 62658793 (+)
G1096191 NA non-coding downstream 21685 62419985 ~ 62580319 (+)
G1096198 NA non-coding downstream 53286 62451586 ~ 62458508 (+)
G1095540 NA other upstream 1040098 61037739 ~ 61352345 (+)
mmp25a LOC106600705 other upstream 1426848 60931123 ~ 60965921 (+)
G1095209 NA other upstream 1573546 60816491 ~ 60818897 (+)
LOC110539079 LOC106600700 other upstream 1678431 60696612 ~ 60777061 (+)
G1095244 LOC108238713 other upstream 2006470 60385664 ~ 60385973 (+)
LOC100305204 hebp2 other downstream 904191 63302491 ~ 63334694 (+)
LOC110538933 LOC106600901 other downstream 1489796 63888086 ~ 63908673 (+)
G1097063 NA other downstream 1738058 64136358 ~ 64136704 (+)
G1097116 NA other downstream 1829701 64228001 ~ 64228684 (+)

Expression


Co-expression Network