XLOC_002924 (ovca2)


Basic Information

Item Value
gene id XLOC_002924
gene name ovca2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35664129 ~ 35668584 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005409
AATCTGTCGCACAAAAAGGAAACGTCAAGTTTATAGTTTCTCTGTAGAgtttaaattgatatttaaaactctatatcacaatatatatatatctgaagtTTTAGGTCAGCTTTTCACTGTATGTCGCACTTGCTTATGATTTAGTACGCTCGTGTTTTGCGTTTGCAGCACCGCTATAAAATCACAACAGCATTGACaggttattaataatttaaaatgtctgCAGTTCCTCTTCGAATTCTCTGTATTCACGGTTATCGACAGAATGGAAACTCTTTTAGGGAGAAGACTGGAGCTTTACGCAAACTATTAAAGAAACAAGTGGAGTTGGTGTTTATTAGTGCGCCACACCAAGTTCCTGCCATTCAGGAGGAAAACTGTGGAAccaatcagcaaTCTCAAACAGTCAGTGTTGGAGATGAGGATCAGAGGGGCTGGTGGTTTTCTGACGTCCAGGCACGAAGTTTTAACGCCAAGCAGGATTGTGAAAGCAGCCTGGGTCTGGAGGAGAGTATCGAGGCTGTAAAAGCTGCGCTGAAGGATCTCGGCCCCTTCAGTGGCATCCTGGGTTTTAGTCAAGGCGCCGCCCTGGTGGCCATGCTGTGTGCACTGCAAGAACAAAAACTAGAGCCGGATTTCAATTTCCGCTTCGCCATTCTGGTCGCCGGATTCCGCAGCGCTTGTTTAGAACATCAGCGTTTTTACGAAGGCCCAGTGATAACCATCCCCTCCCTGCACGTGTTTGGACAGGACGATCGTGTGATTCCAGAGGAGATGAGTCGGGATCTGTTGCCAGCGTTTGATGGAGCTCAAGTCCTTCTCCATCCAGGTGGACACTTTGTTCCGGCCGCGTCCTCGCACAGGCAGACGTATCAAGACTTCCTCAAGAGATTTCAGTGAAACATTGCCTATAATAAGTGAGTTATAGCTATTATGAAGTAGCTCAGAGGCCTGTAAGGAATTTATATGCTATTCTCAGGgaaatgtttactttaataaagaCTGTCAACAAA

Function

symbol description
ovca2 Predicted to enable thiolester hydrolase activity. Predicted to be involved in response to retinoic acid. Predicted to be active in cytoplasm and nucleus. Orthologous to human OVCA2 (OVCA2 serine hydrolase domain containing).

GO:

id name namespace
GO:0032526 response to retinoic acid biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-115 Predicted to enable thiolester hydrolase activity. Predicted to be involved in response to retinoic acid. Predicted to be active in cytoplasm and nucleus. Orthologous to human OVCA2 (OVCA2 serine hydrolase domain containing).

Ensembl:

ensembl_id ENSDARG00000103748

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005409 True 1013 mRNA 0.45 2 35664129 35668584

Neighbor

gene id symbol gene type direction distance location
XLOC_002923 NA coding downstream 9449 35650584 ~ 35654680 (-)
XLOC_002922 BX663516.3 coding downstream 43680 35620333 ~ 35620449 (-)
XLOC_002921 smg6 coding downstream 50377 35584647 ~ 35613752 (-)
XLOC_002920 si:ch211-244c8.4 coding downstream 122058 35537974 ~ 35542071 (-)
XLOC_002919 NA coding downstream 232474 35429504 ~ 35431655 (-)
XLOC_002925 NA coding upstream 143168 35811752 ~ 36093533 (-)
XLOC_002926 BX088524.4 coding upstream 494595 36163179 ~ 36163294 (-)
XLOC_002927 or109-13 coding upstream 536627 36205211 ~ 36207737 (-)
XLOC_002928 or109-11 coding upstream 543991 36212575 ~ 36214582 (-)
XLOC_002929 or109-7 coding upstream 548655 36217239 ~ 36220061 (-)
XLOC_002917 NA non-coding downstream 342492 35312892 ~ 35321637 (-)
XLOC_002912 BX465844.1 non-coding downstream 499838 35160010 ~ 35164291 (-)
XLOC_002939 NA non-coding upstream 796759 36465343 ~ 36469895 (-)
XLOC_002942 NA non-coding upstream 926796 36595380 ~ 36610901 (-)
XLOC_002944 NA non-coding upstream 973582 36642166 ~ 36650904 (-)

Expression


Co-expression Network