LOC110538226 (gosr2)


Basic Information

Item Value
gene id LOC110538226
gene name gosr2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 71440004 ~ 71447266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624910.2
GCAGCAGTTCTTTGGCTTTAATCACTCGGTGGAGCTTCCGTTATTCCATTTCCGTACACAAATCTTCTCAACTGATGACGTGTGCTTTGCACAAAAATCCACTTGTTTTCAGTTTCACAATAAAACCGGATAAAGGTATTCCTCTATAAACCGAGGGTATTTTTGTGTGGATTGTGTCTTGAAACATAAAGGAAAATGGAAACATTGTACCATCAAACAAATAAGCAAATACAGGAGGTGCAGTCGCTCATGGGACGCCTGGAGAACACAGATCGTCAGTCTGTCCACTTGTTGGAGAACGAGCTGCAGGCCAGAATCGACCAGATCTTCAGCCATTTGGAACGTCTGGAAATCCTGGCTAGCAAAGAACCGACAAACCGGCGTCAGAACGCCAAACTGCGGGTAGACCAGCTGAAGTATGATGTTCAGCACCTCCAGACGGCACTGAGGAACTTCCAGCACCGTCGCTACTCACGAGAGACCCAGGACCGAGAGAGGGAGGAGCTCATGAGTCGTACCTTCACCACCAACGATTCAGACACCTCCATCCCCATAGACGAGACGTTGCAGTTAAACTCCAACCTGAACAACGCACACCGAGGCATGGACGACCTCCTGGGCAGCGGCAGCAGCATCCTCACCGGACTCCGGGACCAGAGGGGCACGCTCAAGGGGACCCACAAGAAGATGCTGGATGTGGCCAACATGCTGGGTCTGTCCAACACGGTGATGAGGCTGATCGAGAAGAGGGCCACCCAGGATAAGTTCATCATGATTGGAGGGATGCTGCTCACCTGTGTGGTCATGTTCCTGGTGGTCAAGTACCTGGGCTGACCATGACCGCGTCTGCAACCACAGTTTTGCGTTGGTCTTGGACATTTTTGCACAATAAGCCCATAAGATACGTGAACGGTGATAAATTAGGCTCGTCTTCTAATCAGAGAGCTCCTTGAAAGTATTGTTTTCCGATCGGAAGGCGAGGAATTATCCGTCTTTTAATTTCCATGGGTTTTTGTCACCCACTTCTATTTCAACCACTCTTTGTTTGCACCAGGTAAATGGGTGTTAAGCAagacacatacactgagtgtacaacacattaagGATGCCTTCCTAATGTGAGTTgcaccttttgccctcagaacagcctcaattcatctgggcatggactctgcaaggtATTGAAAGcggtccacagggatgctggcccatgttgattccaatgcctcccacagttgtcaagttggctggatgtcccttGGACGGTGGACCATTAGTGACACACACGGGAAGCTGATGAGCGTAAtaaacagcgttgcagttcttgacactaaccagtgcgcctggcacctactagcataccctgttcaaaggcactcttttgtcttgcccattcagagtggcacacatatacaatccatgtctcaaggcttacattttttaattttttatccaTATCCTCCAtttatactgattgaagtggatttaacaagtgacatcaataagggatcatagctttcacctggtcagcctgttatggaaagagcaggcgtcCTTAATGTTTTTGCACTCAGTGTCTATACTTTAATTTGACTTCAAACTGAACAACGTGGAACCTTGCATCCATAACTCCAGCTCGCTGACACCTGCCACTCATCTCGGCGGTCATCCACCTGACGGCCTGTGTGTGAAGCCGTAGGTGGGTGAGATAGCCAGTCATGAAATGTTCTCTACCTTATTTCAAACGAATTCTCCTTCAAGGTCCATTTCCTTGCCTTCGTCTCCCCTATAATGAGTTCTCCATTGCCTTGTGGGTGCTTCCATCTTCACCATCTATTTGAAGCATTATTTGGCTGTTTGCTCTTTTTCCCAAAATGGACAGAAAAAAAAGTTATCTGGAAATGGATGAAAAGCTGATGTTGCACCTCATCACACATCCGAATGACACTGCCTGGAGAATACTTATGTCAGATGAACCAATACATGTATGTagcccagggagggagggaccgggaCCTGTGCACAAGCTACAGACCGATTTAGTAAGAACAAAAACACAAAAGTGATGAAATATTCTGCTTGTCGTGTTTTGAGAAACTATCTATACAAGGTGTATTGTCGTCACACTTTCAAAATGTAAATTGTCTGGACATTTGCTTGGCCCTAGTCTCACTATGTTAGTGCAACCAAGGTTCAAATTGTAATTCTCTGAAGATCaaaaattaaacattttaaaaacaa
>XM_021624912.2
GCAGCAGTTCTTTGGCTTTAATCACTCGGTGGAGCTTCCGTTATTCCATTTCCGTACACAAATCTTCTCAACTGATGACGTGTGCTTTGCACAAAAATCCACTTGTTTTCAGTTTCACAATAAAACCGGATAAAGGTATTCCTCTATAAACCGAGGGTATTTTTGTGTGGATTGTGTCTTGAAACATAAAGGAAAATGGAAACATTGTACCATCAAACAAATAAGCAAATACAGGAGGTGCAGTCGCTCATGGGACGCCTGGAGAACACAGATCGTCAGTCTGTCCACTTGTTGGAGAACGAGCTGCAGGCCAGAATCGACCAGATCTTCAGCCATTTGGAACGTCTGGAAATCCTGGCTAGCAAAGAACCGACAAACCGGCGTCAGAACGCCAAACTGCGGGTAGACCAGCTGAAGTATGATGTTCAGCACCTCCAGACGGCACTGAGGAACTTCCAGCACCGTCGCTACTCACGAGAGACCCAGGACCGAGAGAGGGAGGAGCTCATGAGTCGTACCTTCACCACCAACGATTCAGACACCTCCATCCCCATAGACGAGACGTTGCAGTTAAACTCCAACCTGAACAACGCACACCGAGGCATGGACGACCTCCTGGGCAGCGGCAGCAGCATCCTCACCGGACTCCGGGACCAGAGGGGCACGCTCAAGGGGACCCACAAGAAGATGCTGGATGTGGCCAACATGCTGGGTCTGTCCAACACGGTGATGAGGCTGATCGAGAAGAGGGCCACCCAGGATAAGTTCATCATGATTGGAGGGATGCTGCTCACCTGTGTGGTCATGTTCCTGGTGGTCAAGTACCTGGGCTGACCATGACCGCGTCTGCAACCACAGTTTTGCGTTGGTCTTGGACAGCGAGGAATTATCCGTCTTTTAATTTCCATGGGTTTTTGTCACCCACTTCTATTTCAACCACTCTTTGTTTGCACCAGGTAAATGGGTGTTAAGCAagacacatacactgagtgtacaacacattaagGATGCCTTCCTAATGTGAGTTgcaccttttgccctcagaacagcctcaattcatctgggcatggactctgcaaggtATTGAAAGcggtccacagggatgctggcccatgttgattccaatgcctcccacagttgtcaagttggctggatgtcccttGGACGGTGGACCATTAGTGACACACACGGGAAGCTGATGAGCGTAAtaaacagcgttgcagttcttgacactaaccagtgcgcctggcacctactagcataccctgttcaaaggcactcttttgtcttgcccattcagagtggcacacatatacaatccatgtctcaaggcttacattttttaattttttatccaTATCCTCCAtttatactgattgaagtggatttaacaagtgacatcaataagggatcatagctttcacctggtcagcctgttatggaaagagcaggcgtcCTTAATGTTTTTGCACTCAGTGTCTATACTTTAATTTGACTTCAAACTGAACAACGTGGAACCTTGCATCCATAACTCCAGCTCGCTGACACCTGCCACTCATCTCGGCGGTCATCCACCTGACGGCCTGTGTGTGAAGCCGTAGGTGGGTGAGATAGCCAGTCATGAAATGTTCTCTACCTTATTTCAAACGAATTCTCCTTCAAGGTCCATTTCCTTGCCTTCGTCTCCCCTATAATGAGTTCTCCATTGCCTTGTGGGTGCTTCCATCTTCACCATCTATTTGAAGCATTATTTGGCTGTTTGCTCTTTTTCCCAAAATGGACAGAAAAAAAAGTTATCTGGAAATGGATGAAAAGCTGATGTTGCACCTCATCACACATCCGAATGACACTGCCTGGAGAATACTTATGTCAGATGAACCAATACATGTATGTagcccagggagggagggaccgggaCCTGTGCACAAGCTACAGACCGATTTAGTAAGAACAAAAACACAAAAGTGATGAAATATTCTGCTTGTCGTGTTTTGAGAAACTATCTATACAAGGTGTATTGTCGTCACACTTTCAAAATGTAAATTGTCTGGACATTTGCTTGGCCCTAGTCTCACTATGTTAGTGCAACCAAGGTTCAAATTGTAATTCTCTGAAGATCaaaaattaaacattttaaaaacaa
>XM_036938288.1
GCCCCCCAAACCCGAGTTCCTAGtagtcttgaaagcaccattaaTTCACTGTCTGGAGTTTACGTATCTAGCGCAAATACAGGAGGTGCAGTCGCTCATGGGACGCCTGGAGAACACAGATCGTCAGTCTGTCCACTTGTTGGAGAACGAGCTGCAGGCCAGAATCGACCAGATCTTCAGCCATTTGGAACGTCTGGAAATCCTGGCTAGCAAAGAACCGACAAACCGGCGTCAGAACGCCAAACTGCGGGTAGACCAGCTGAAGTATGATGTTCAGCACCTCCAGACGGCACTGAGGAACTTCCAGCACCGTCGCTACTCACGAGAGACCCAGGACCGAGAGAGGGAGGAGCTCATGAGTCGTACCTTCACCACCAACGATTCAGACACCTCCATCCCCATAGACGAGACGTTGCAGTTAAACTCCAACCTGAACAACGCACACCGAGGCATGGACGACCTCCTGGGCAGCGGCAGCAGCATCCTCACCGGACTCCGGGACCAGAGGGGCACGCTCAAGGGGACCCACAAGAAGATGCTGGATGTGGCCAACATGCTGGGTCTGTCCAACACGGTGATGAGGCTGATCGAGAAGAGGGCCACCCAGGATAAGTTCATCATGATTGGAGGGATGCTGCTCACCTGTGTGGTCATGTTCCTGGTGGTCAAGTACCTGGGCTGACCATGACCGCGTCTGCAACCACAGTTTTGCGTTGGTCTTGGACATTTTTGCACAATAAGCCCATAAGATACGTGAACGGTGATAAATTAGGCTCGTCTTCTAATCAGAGAGCTCCTTGAAAGTATTGTTTTCCGATCGGAAGGCGAGGAATTATCCGTCTTTTAATTTCCATGGGTTTTTGTCACCCACTTCTATTTCAACCACTCTTTGTTTGCACCAGGTAAATGGGTGTTAAGCAagacacatacactgagtgtacaacacattaagGATGCCTTCCTAATGTGAGTTgcaccttttgccctcagaacagcctcaattcatctgggcatggactctgcaaggtATTGAAAGcggtccacagggatgctggcccatgttgattccaatgcctcccacagttgtcaagttggctggatgtcccttGGACGGTGGACCATTAGTGACACACACGGGAAGCTGATGAGCGTAAtaaacagcgttgcagttcttgacactaaccagtgcgcctggcacctactagcataccctgttcaaaggcactcttttgtcttgcccattcagagtggcacacatatacaatccatgtctcaaggcttacattttttaattttttatccaTATCCTCCAtttatactgattgaagtggatttaacaagtgacatcaataagggatcatagctttcacctggtcagcctgttatggaaagagcaggcgtcCTTAATGTTTTTGCACTCAGTGTCTATACTTTAATTTGACTTCAAACTGAACAACGTGGAACCTTGCATCCATAACTCCAGCTCGCTGACACCTGCCACTCATCTCGGCGGTCATCCACCTGACGGCCTGTGTGTGAAGCCGTAGGTGGGTGAGATAGCCAGTCATGAAATGTTCTCTACCTTATTTCAAACGAATTCTCCTTCAAGGTCCATTTCCTTGCCTTCGTCTCCCCTATAATGAGTTCTCCATTGCCTTGTGGGTGCTTCCATCTTCACCATCTATTTGAAGCATTATTTGGCTGTTTGCTCTTTTTCCCAAAATGGACAGAAAAAAAAGTTATCTGGAAATGGATGAAAAGCTGATGTTGCACCTCATCACACATCCGAATGACACTGCCTGGAGAATACTTATGTCAGATGAACCAATACATGTATGTagcccagggagggagggaccgggaCCTGTGCACAAGCTACAGACCGATTTAGTAAGAACAAAAACACAAAAGTGATGAAATATTCTGCTTGTCGTGTTTTGAGAAACTATCTATACAAGGTGTATTGTCGTCACACTTTCAAAATGTAAATTGTCTGGACATTTGCTTGGCCCTAGTCTCACTATGTTAGTGCAACCAAGGTTCAAATTGTAATTCTCTGAAGATCaaaaattaaacattttaaaaacaa

Function

symbol description
gosr2 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intra-Golgi vesicle-mediated transport and vesicle fusion. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 6. Orthologous to human GOSR2 (golgi SNAP receptor complex member 2).

NR:

description
Golgi SNAP receptor complex member 2-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005795 Golgi stack cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K08496 GOSR2, BOS1; golgi SNAP receptor complex member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624910.2 False 2241 mRNA 0.46 6 71440004 71447266
XM_021624912.2 False 2143 mRNA 0.46 7 71440004 71447266
XM_036938288.1 True 2089 mRNA 0.47 6 71440654 71447266

Neighbor

gene id symbol gene type direction distance location
LOC110538222 LOC106607324 coding upstream 8158 71423038 ~ 71431846 (+)
LOC110538220 LOC106607322 coding upstream 55306 71381208 ~ 71384698 (+)
LOC110538218 LOC106601135 coding upstream 219569 71199101 ~ 71220435 (+)
LOC110538217 hop2 coding upstream 252219 71105931 ~ 71187785 (+)
LOC110538215 LOC106601138 coding upstream 257214 71167219 ~ 71182790 (+)
LOC110538227 LOC100380862 coding downstream 40390 71487656 ~ 71506845 (+)
LOC110538230 rs11 coding downstream 64580 71511846 ~ 71514863 (+)
LOC118937916 NA coding downstream 65414 71512680 ~ 71512763 (+)
LOC118937915 NA coding downstream 65866 71513132 ~ 71513213 (+)
LOC118937918 NA coding downstream 67164 71514430 ~ 71514513 (+)
G1105943 NA non-coding upstream 18589 71421211 ~ 71421415 (+)
G1105941 NA non-coding upstream 31032 71408674 ~ 71408972 (+)
G1105865 NA non-coding upstream 94384 71282741 ~ 71345620 (+)
G1105888 NA non-coding upstream 107644 71324895 ~ 71332360 (+)
G1105838 NA non-coding upstream 205919 71233701 ~ 71234085 (+)
G1105976 NA non-coding downstream 102540 71549806 ~ 71550126 (+)
G1105980 NA non-coding downstream 109607 71556873 ~ 71557096 (+)
G1105982 NA non-coding downstream 111164 71558430 ~ 71559232 (+)
G1105987 NA non-coding downstream 126448 71573714 ~ 71577307 (+)
G1106049 NA non-coding downstream 247198 71694464 ~ 71694700 (+)
G1105655 NA other upstream 533575 70902905 ~ 70906429 (+)
G1105467 LOC106601028 other upstream 806033 70612303 ~ 70633971 (+)
G1105393 NA other upstream 1068793 70370755 ~ 70371211 (+)
G1105357 NA other upstream 1112878 70324958 ~ 70327126 (+)
G1105281 NA other upstream 1245332 70162689 ~ 70194672 (+)
psmg3 psmg3 other downstream 494285 71941515 ~ 71942804 (+)
LOC110538241 LOC106607115 other downstream 570327 72016045 ~ 72019145 (+)
G1109505 NA other downstream 1858159 73305425 ~ 73306154 (+)
LOC110538462 rpc11 other downstream 1937542 73384755 ~ 73386199 (+)
G1109778 NA other downstream 2386377 73833643 ~ 73834606 (+)

Expression


Co-expression Network