G1095666 (LOC106600702)


Basic Information

Item Value
gene id G1095666
gene name LOC106600702
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 61404983 ~ 61446364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1246080
GGGTTAATATGTGCTTACTGTTATGGTCATATGGTTACGTGCAAAATAGTAAGACAGATTTATAGATCAACTGTGCCGTACCTGCAGTAGTGTCACAGGTTCGATGCAAATGTTGTTCGAAGATGAAACATTCACGCATTCCACCACAGAGGTCTGGAACTCCTGCAGGACTTGCTCAGCTGAGGACACAAAGAGAGTTTATTACTTATcataccaatacacacacacatacccacctaTACTCCTAAGGTCGTATCTTTCCGGAAACAATCCCTAGCCAGCCCCTACCCCAGGCATTTGTGTACATCCGAGAGGCCTGGATAGGGTGTAAGCAATATGTTAAATCCCACCTATCGTATCAAAGGACCTACAGCAATTCCATTGCTTTTCCAATTCTTTTAAATCTATAGAGCTTGTTACTGAACAGGCACATGTCTAACACACAAAGACAGTTGTCCATCCACTCACCCCCACCCTGGCCAGTgccccagccagccacccagcacTTAGTCCCTGTGCTGAAGGTGCTGGTTCCCTGGTCCACACAGATAGGCTGGATGTAGTTAGATAACTTGGGTTGGCTGGCCAGTCGGAGGATGGCCACGTTGTTGCCCCCCACCCTGGCCAGTGCCCCAGCCAGACACCCAGCACTTAGTCCCTGTGCTGAAGGTGCTGGTTCCCTGGTCCACACAGATAGGCTGGATGTAGTTAGATAACTTGGGTTGGCTGGCCAGTCGGAGGATGGCCACGTTGTTGCCTGTCAAGTTGCTCATGGTGATGTTGATGACGTTCAGGGTTACCTCGTTGGGGTTGGAGCCGTTTTGCTTCAGACGGCCCAGAATCACGGTCCATTGAGCGGCGTTGGGCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1246080 True 868 lncRNA 0.50 2 61404983 61446364

Neighbor

gene id symbol gene type direction distance location
LOC110539102 NA coding upstream 79828 61317055 ~ 61325155 (+)
LOC110538925 cln3 coding upstream 119790 61258812 ~ 61285193 (+)
LOC118936506 NA coding upstream 194502 61200915 ~ 61210481 (+)
LOC118936507 cln3 coding upstream 223207 61178894 ~ 61181776 (+)
LOC118937695 NA coding upstream 240885 61163833 ~ 61164098 (+)
LOC110539107 LOC106600721 coding downstream 78334 61524698 ~ 61530938 (+)
LOC110539080 LOC106600701 coding downstream 141199 61587563 ~ 61596487 (+)
nudt9 nudt9 coding downstream 228363 61674727 ~ 61682763 (+)
LOC110537909 ehd3 coding downstream 236603 61682967 ~ 61699122 (+)
atp2a1 atp2a1 coding downstream 278404 61724768 ~ 61753320 (+)
G1095657 NA non-coding upstream 14641 61390061 ~ 61390342 (+)
G1095653 NA non-coding upstream 24544 61380225 ~ 61380439 (+)
G1095615 aldoa non-coding upstream 41045 61359536 ~ 61363938 (+)
G1095617 NA non-coding upstream 46134 61358017 ~ 61358849 (+)
G1095720 NA non-coding downstream 25523 61471887 ~ 61472297 (+)
G1095721 NA non-coding downstream 26189 61472553 ~ 61472783 (+)
G1095676 NA non-coding downstream 27054 61473418 ~ 61473816 (+)
G1095733 NA non-coding downstream 53962 61500326 ~ 61500543 (+)
G1095736 NA non-coding downstream 56990 61503354 ~ 61503663 (+)
G1095540 NA other upstream 52638 61037739 ~ 61352345 (+)
mmp25a LOC106600705 other upstream 439388 60931123 ~ 60965921 (+)
G1095209 NA other upstream 586086 60816491 ~ 60818897 (+)
LOC110539079 LOC106600700 other upstream 690971 60696612 ~ 60777061 (+)
G1095244 LOC108238713 other upstream 1019010 60385664 ~ 60385973 (+)
LOC118937701 LOC100136295 other downstream 1000140 62441706 ~ 62448515 (+)
LOC100305204 hebp2 other downstream 1856127 63302491 ~ 63334694 (+)
LOC110538933 LOC106600901 other downstream 2441732 63888086 ~ 63908673 (+)
G1097063 NA other downstream 2689994 64136358 ~ 64136704 (+)
G1097116 NA other downstream 2781637 64228001 ~ 64228684 (+)

Expression


Co-expression Network