G1095993 (fam57bb)


Basic Information

Item Value
gene id G1095993
gene name fam57bb
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 62068062 ~ 62072963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1246454
GGTTAGgagcatgtaaaacgtcagcGCCATCTTATCAAAGatatgttgtattcggcgcatgtgacaaataaaattagatttgagacagagacaggcagacagagacaggcagaccgagacagtcagacagacagagacagagttcaGTATGTTACCTGCTGTAGGCGTAGTAGAGGTAGGGGAAGAGCAGAACTCGACAGATGAAGAAAGTGACCAGCATGAGAGCGCCATTCACTTTATGAAGAAGAGTGTGCTGCTTCTTGTACTgagggggacaaagagagagagagagagaaagggcaggaACAAGGGACGGGGAAAAACAAGAGCAGGGTGAAGGACAGAAAGAGCTTGGGTAAATGTCAACCCAAAATCACAGGAGACAAGAACACTAACATGAAAGCTAGAAAGTGAGCCCTTCAAAATCAGAGAGACTCAAGGCTCTTAAATTGCTGCACGGAGAGTAAGAGactgaggaagaagagagaggagagaaaaagagagagcaagagaaagagcgAAAGAAAGAACAGGGGttaaaagagagggggagaggtaggagtgagtgagtgagaattaCCTGGATGAGGATTTTCCCCAGGCAGACGGACGGAGTGCTGAGTTCAGCCATGAACATGACACCCTGGAAGTAATCGCCCTTTCCCTGCCTCCAGAACTAACAtcaagagagcgagaaagaggggagtggggggagaAAGCCGGGAAGAGTGAGATGCGATAGATATGATAGATATCATGATATGGCTGATAAAGTTTATTGACAGACCATTGAAAGAAAATCTCAAACACGCACACCTCATCTCCCCTTAAAAACACGTGTCCATAGAAGGGATGTTAACATTGGCGTCCCGTGCCGCTGCCAGTAGCAACGGGAGGCAGATGGGGATTGGAGCAAGAGAGAGTCTAGTCTGCAGATGGTTGCCGGTTAGGGACATTTTTAGCGATCAGAAACCAAGTCACCAAAGGTTCATCTCTTTCTATCAAGACTTAAAGGattattaagtgtgtgtgtgtgtatatataatttaTCATTAGTTATTTTCCCCCCCTTTAGACACAAGACAGACCATGCCACGGTAGACTACCAAGATAGTCCGCTAAAGCCACCCTAGTTACAGCGATAGATAGTTACCACGGAGACGGGGAAGCAGATGGTCACCATGACGACGTGGTGCAGCACCATGAGGAACTCTCTGCGCAGGTAGCTGGCCACTGCCGAGCCCATTGGCTTAGGCCTGCCGCCCTCCTCCTCGTGCCCTTTGACCTGCAGCTTGTGCCAGTAGCACAGGAACATGGCGTAGATGTCGTACGCAAAGTAGGGCACCGCAAACAGGATGTAGGTACTGGTAAGCCAGTGTCTGGAAAGGTAGGGCGcaagggggggagacagagaaagtgagaaaggagagagcgaaagaaagagaaagtgcaACAGTTTATTTTCTATGCAACAATGTGTACCTACACTGTAACTACATGTACACTGTAGCTGCCTATGTGACTACCATGTAAATACACTATTGCCTATTTCAGTGAGGCTCCAGCCTAGACGTCAAGAAGTTAAGTGACTGGCCAGGATGCACTGCTCTTGGCACGTGCGTGATTTGGGTGGGTTTGTGATTTGGTAGTCAAATGAGCCGGCACTCGCACCTCCCGACTTTGACTGGCAAATGAGGGCAAGGGGGAGGGAGTCGGTGACTGGCagtatctccctcctctctctcctcctcctcctaattgatggaaagatgagggggaagaggagcgaaggagggggtgggggggggggttaagaagAGCAGCTGTGTCACATTGTGAGTTCGTTCTTAGGACAACAATGTCTGACTCAGAATcacagcatctcagtagtctaaagaaTCTTCCTTTCTTACTCTGCTTttcctctcctccaatcctcctcttccttcaaccAAAAACAAACCTTCCTCTTCTAACCAAAAACATGACACTGTGTGCATTTCATATAGTTTTGCTGTAGTCCACTGTTAACAAAGTTGCAGTTGTAATACCAGTGGAGACATGTTTGAGTAGCTGCTCCTACAGTTCCATAGCAGCATGCTGCAGTCTAGGTTTCTGAGTGACTGCATTACAGATACTAAAATAGCTCTGCTGGCTTTGGGACAAATAGAGGTTAATTGGGTTTAAATACTAATTCGGTTAACAGGGACAAGGTGAGCAGGGAGAGAATGACAgattacgcacacacacacacacacacacacacacacacacacacttgaatacTTTATTTGGATCGAAAGTTAAACATACACAGTAAATTGGCCAGAGTTAACTTGTTGATTTTTCAATGTCATATTTCTAGTGTTGATTGTGGAGTTAAATTAACTCTGTAAGAGTGAAATTAACACTCAGTGGTTTAAAATATCCCCAATGTGGGGGTTTATAACCAGTGTTGAGTGTGAGAGTGTCAGTTTTACAAACATTCCCatcaaaaccacacccatcattatcagatttcccagcatgctcttcTGCAACACACGTGTCTTCTGTTTCCCTCAGAATAGAGTGGACAGGACCAGGCAGTAAATCAGACTAGTGAAAAAAAAATAACATGATCAATGATGGGTCTTTTCTACACAGAAAATCATACACAATTATTGCCTGATGTTTTCCTAAATCCTAAACTTCCCAAATCCTTTCAGATGTATTTCAAACCATACTTCAGATTGAAACATTATGACAAATCAGTCTAAAACAATGTTTGACAGACGGTCATAACGCCAATTAAAAAAGTTAACATTGGTCGCTGATTACATCACTTTTTTACATGGTGGGGTTGCGAAAAAAATTTAATATCAAAATGGGGTCACGGaccaaaaaagtttgggaacccctgattTAGGAAGTCTCTTCACAATGTCACTAACCCcaacagtcattctgaatgcagctGCGGGTGAATAAAAATTCCTACTGTTGGATGTCCTAACTGGCGGAATTCCAATAGGAATCATATATCACTTTGTAAGCCAGCAGAATGTGACTtacaggcctgatgtggcctgtaaaccaggaggtttctaacaccactgtgttagggtaaaACTTTGCTATCAAACTAAGGCCTTATGACggctttatgcgcaaatatttataGAATAcccatcatatcaaagtaaacttggagtcacgcgatgacatggtgtgtggtcctcctaCTATGACtggggaaaccatgcagtttattaagcTTCAGATGAAATAAACGATGATTAACTTCACAGGTTGGTGAAAGTACATGGTTATCTTGATGCGCCTTCCCAATAAAAATCGGAGGgccttattctggtgacatgaggACGTCTGACAAATAAAACAagaatctcatcatgtagaccaGGCTACCCGCACTGTGTCTGCAAGCTGTTGGCCAGAGAGCACGTGCCAAGACCAGTCTTTTTTTGTGACAAAGCTATCCGTAGAGTTTCAAATACGATGGAAAAACATTGAACTTTAGActtattcggtacatgaaaacttTAGTGAAAAAgcacattttgtgtgcactacgtcatcacacactggcttttatctgcaacaagtccatTTGGTGGAAACACAGCTATTGGTGGGAAAATATGCAGATTTTCTTGatgcggattttagaatattcgcatgaaaatctgtcgccgattggatggaaacctagctagtgtcgATTTAACACTGGAGAGTTTGCGGTGTCGTTAGGGACCCAAAGTGCTCAAGCGAAAAAACATTCGGAACTGCGGTTAATGACTCGTTGAGCAATTATGACTGATTATTTAGTTACATTAAAACAATAGATGGCCACATCTTAATGGCTAATTAAATGACATATATTTAACAACGACATGCGGGCAGTAGGTtcagaacaacaatgacaaaaactGTATACCCAAATTAAAGAAGGGCAAAGAGGCATGTGCTCTGCACAAGTAGAGCCCATCTGTGCAGGTgcccgcaaacacacacacctggaacaCAACTTTACAGCAACTACTACTGCATTATCATTATTCTGTACTTACTGATCCTCGATGATGTCCTCACAGGAGGATGCGATGATGTAGCCAGCTGAGGAAGCCATGATGGCTTGGATGGATGACACCAGCctagAGACACGATGGTGGCGTCTCCCTCGCTCAAGCCCAAGCCTGGAGCCTTTTTCAGGCCTCTCTTAGACAGCAGGAACAGGCCCGGGAAGAAGATGGAGCCGGCAGCCAGGATGCTCAGCAtggttccagtgtgtgtgtgtgtgtgtgtgtcaacaggTACCTCACTACTGCCCTCAAACCACTTGACAAGTGGGAAAAGGTTGAATGACTGTTCTACGCAGGGTACTTCCAAAGCTATGGTAGCCGAGTTTCCAACTATCACTCGCTGCTAGATGGTTGAAGGTATATCATTAGAAAGCGTGGCAGCGTGTAAGTGTTGTCAACAGAACACAAATGTTAGTAATGTTATACTAGTAATGTTATACTAGTTATGTTAATACTGTTATGCTAGTAGTAATGTTTTGCTATGTTATTCTAATGCAGTATGTGGTCAAATGCTGCATTTGTTTTTAGTAGGCTAGTTTTGGGGATATTTCAGGAATGAAAATGGACTTGCTAGTGGTTACGATCCATGTTAATTAAACAGATACATAAGGAAAGAGGGCTACGATACAGCCGTGGGTGGTAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1246454 True 4731 lncRNA 0.44 2 62068062 62072963

Neighbor

gene id symbol gene type direction distance location
doc2a LOC106600746 coding upstream 64976 61952290 ~ 62003086 (+)
nupr1b LOC106600745 coding upstream 171872 61894747 ~ 61896190 (+)
LOC110537918 NA coding upstream 231729 61835185 ~ 61836333 (+)
atxn2l atxn2l coding upstream 234461 61813631 ~ 61833601 (+)
sh2b1 sh2b1 coding upstream 254606 61794146 ~ 61813456 (+)
LOC110537935 LOC106600756 coding downstream 97676 62170639 ~ 62185966 (+)
zgc:193811 LOC106600757 coding downstream 128387 62201350 ~ 62205293 (+)
kcnc3a LOC106600760 coding downstream 165041 62238004 ~ 62342939 (+)
aldh16a1 aldh16a1 coding downstream 277833 62350796 ~ 62365514 (+)
LOC110537940 LOC106600765 coding downstream 319480 62392443 ~ 62398300 (+)
G1095965 NA non-coding upstream 10763 62051138 ~ 62057299 (+)
G1095971 NA non-coding upstream 44665 62018416 ~ 62023397 (+)
G1095916 NA non-coding upstream 63689 62003228 ~ 62004373 (+)
G1095900 NA non-coding upstream 175064 61892656 ~ 61892998 (+)
G1095994 NA non-coding downstream 3799 62076762 ~ 62079485 (+)
G1095995 LOC106600755 non-coding downstream 60456 62133419 ~ 62134225 (+)
G1096139 LOC106567613 non-coding downstream 298111 62371074 ~ 62371298 (+)
G1095540 NA other upstream 715717 61037739 ~ 61352345 (+)
mmp25a LOC106600705 other upstream 1102467 60931123 ~ 60965921 (+)
G1095209 NA other upstream 1249165 60816491 ~ 60818897 (+)
LOC110539079 LOC106600700 other upstream 1354050 60696612 ~ 60777061 (+)
G1095244 LOC108238713 other upstream 1682089 60385664 ~ 60385973 (+)
LOC118937701 LOC100136295 other downstream 373541 62441706 ~ 62448515 (+)
LOC100305204 hebp2 other downstream 1229528 63302491 ~ 63334694 (+)
LOC110538933 LOC106600901 other downstream 1815133 63888086 ~ 63908673 (+)
G1097063 NA other downstream 2063395 64136358 ~ 64136704 (+)
G1097116 NA other downstream 2155038 64228001 ~ 64228684 (+)

Expression


Co-expression Network