G1109618


Basic Information

Item Value
gene id G1109618
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 73609567 ~ 73610146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1261566
aagccataagactgctgaacaattaatcaaatggccacagtactatttacattgacacccccatttgttttgtacactgctgctactcgctgtatattatctatgcatagtcacctcTTCCTACATGTACcgattacctcgactaaccacattgactcggtacctgtaccacctgtatatagcctatttattgttattttattgatggttaaggacttgtaagttagcatttcacggtaagtattttattgtgttgtattcggcgcatgtgacaaagtttggtttgatttgatttagatgcCCATGTATGTAGGCTGTTTTTTAATACAGTCATCTCGGTTTTCATTTGAACCATACTTTTATCCTTCACTTGTTTGTAACAATTGCAGATACATCGGCAAATTTGTTTTTGTAGTCAGCATCGTTCTGTTGTTATCCGCAGTCACAGTCAGACAGGCTAGACATCTTGATTCTATGTTTAGCAGAGATCTTCTGTAAATGAGTGACGCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1261566 True 510 lncRNA 0.38 2 73609567 73610146

Neighbor

gene id symbol gene type direction distance location
hba4 hba4 coding upstream 7596 73601060 ~ 73601971 (+)
LOC110538448 hba1 coding upstream 11979 73596585 ~ 73597588 (+)
hba1 hba1 coding upstream 23378 73585417 ~ 73586189 (+)
LOC110538450 LOC106601071 coding upstream 39764 73568810 ~ 73569803 (+)
LOC110538451 LOC106601078 coding upstream 46163 73562501 ~ 73563404 (+)
LOC110538447 LOC106601071 coding downstream 9098 73619244 ~ 73620456 (+)
LOC110538437 LOC106601064 coding downstream 18507 73628653 ~ 73629929 (+)
LOC110538438 LOC100135791 coding downstream 24575 73634721 ~ 73635984 (+)
LOC110486357 LOC100135791 coding downstream 30626 73640772 ~ 73641980 (+)
LOC100135791 LOC100135791 coding downstream 36646 73646792 ~ 73647950 (+)
G1109647 LOC106589010 non-coding upstream 2584 73605619 ~ 73606983 (+)
G1109606 NA non-coding upstream 13875 73581659 ~ 73595692 (+)
G1109607 NA non-coding upstream 18888 73566043 ~ 73590679 (+)
G1109608 LOC106607371 non-coding upstream 48255 73560328 ~ 73561312 (+)
G1109637 NA non-coding upstream 53594 73555743 ~ 73555973 (+)
G1109665 LOC100135790 non-coding downstream 29012 73639158 ~ 73645348 (+)
G1109688 LOC100135791 non-coding downstream 74717 73684863 ~ 73692904 (+)
G1109696 NA non-coding downstream 101233 73711379 ~ 73713876 (+)
G1109697 NA non-coding downstream 106619 73716765 ~ 73718069 (+)
G1109721 NA non-coding downstream 128949 73739095 ~ 73739315 (+)
LOC110538462 rpc11 other upstream 223700 73384755 ~ 73386199 (+)
G1109505 NA other upstream 303413 73305425 ~ 73306154 (+)
LOC110538241 LOC106607115 other upstream 1591277 72016045 ~ 72019145 (+)
psmg3 psmg3 other upstream 1666768 71941515 ~ 71942804 (+)
G1105655 NA other upstream 2703138 70902905 ~ 70906429 (+)
G1109778 NA other downstream 223497 73833643 ~ 73834606 (+)
G1109786 NA other downstream 236109 73846255 ~ 73846794 (+)
G1111126 LOC106578813 other downstream 1350120 74960266 ~ 75048356 (+)
G1111805 LOC105030512 other downstream 1808643 75418789 ~ 75423163 (+)
G1111961 NA other downstream 2134993 75745139 ~ 75745620 (+)

Expression


Co-expression Network