XLOC_030005 (BX470224.3)


Basic Information

Item Value
gene id XLOC_030005
gene name BX470224.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21258218 ~ 21259238 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058725
gtgtagataaacCAGTGTTTTGTGTGACTGAATTCATTCTTCACTCTCACTGGGTGCGATTTCTTCCTGTTTTCCAGAAGCATGACAGCTAGAAGTGGCAATGACTTCCAGCTTGTTATCCCTGAAAAAGGTGAAAGAGTTAAGATTAATCATGGACCTGCTCTTGTTGTTTCGTGCCACTTGTCTCCTGCAATCAGTGCTGCTGACATGGACATTACCTGGTATAGCGAGACATCTGTTGTGTGCGCTTATAAGAATCGAGAGGTGACACAGGGAGTTGGCTATGAAGGAAGAGCCAATCTGTTCATCCATGATCTGGTGAGAGGGAATGTGTCCTTACGAGTGGCAAACTTTACAGAGTCTGATCTGGGAGTTTACATGTGCCAGGTCAccagtcaaaataaaacacagcagATAACTGTCAATGTAACAGAAGAAGAATCTGCCATTTTCAAGGATCAGCACTTATTCACAGTGGTAAGACA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093719

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058725 True 485 processed_transcript 0.44 3 21258218 21259238

Neighbor

gene id symbol gene type direction distance location
XLOC_030004 si:dkey-13n15.11 coding upstream 8457 21225017 ~ 21249761 (+)
XLOC_030003 bmp10 coding upstream 43919 21211135 ~ 21214299 (+)
XLOC_030002 arhgap25 coding upstream 54149 21181047 ~ 21204069 (+)
XLOC_030001 cds2 coding upstream 86019 21144269 ~ 21172199 (+)
XLOC_030000 hs3st1l2 coding upstream 117128 21100356 ~ 21141090 (+)
XLOC_030006 BX470224.2 coding downstream 11212 21270450 ~ 21271359 (+)
XLOC_030007 BX470224.1 coding downstream 14927 21274165 ~ 21278501 (+)
XLOC_030008 NA coding downstream 25804 21285042 ~ 21285547 (+)
XLOC_030009 sh2d1aa coding downstream 28989 21288227 ~ 21294105 (+)
XLOC_030010 si:ch73-92i20.1 coding downstream 632067 21891305 ~ 21909082 (+)
XLOC_029996 BX510312.1 non-coding upstream 583168 20674933 ~ 20675050 (+)
XLOC_029992 NA non-coding upstream 711729 20542900 ~ 20546489 (+)
XLOC_029982 BX547941.1 non-coding upstream 1180408 20077694 ~ 20077810 (+)
XLOC_029980 NA non-coding upstream 1292935 19961795 ~ 19965283 (+)
XLOC_029972 NA non-coding upstream 1852280 19404532 ~ 19405938 (+)
XLOC_030013 NA non-coding downstream 748541 22007779 ~ 22008067 (+)
XLOC_030015 NA non-coding downstream 826299 22085537 ~ 22094364 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_00620788_00628381 NA coding CI01000339 null 620788 ~ 628381 (+)