XLOC_030153


Basic Information

Item Value
gene id XLOC_030153
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 29784172 ~ 29792624 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058959
cagTTGTTCAGAGGCAGACATTTATTTTGGACCCTGCTAAGAAGAGGCAATGAAGTCTTGTCCGTCACTGGCaacttgttttgtgttgtCTTATCTGTCATGTATGGTGGGTGTAGTCAGCGCAACAAACCCTTACCTAAAACCTGGCTTTTTGGATTTTAACTCCTGGTTTTGGAACACCCCTCGAGGGCCACAGATGTTCTCCTGCCTTACATACATTGAGAAAAACCTCCAGGTTGACTGTGAATTCCCTGAGACCCACAAGATCCCAGGCCCATTCTGCGAGTTCAGACAGGATGGGCGACTCATGGGATCCACCTACCCAAATACTCCAGTTCAATTGATTCCTCATATTGAGGTCAGACGCCGTGCTAATGTCTCCCTGGTGTCGCCGAACATTTGTCGCCTCACCTGGATGCCAATGTCAGATGACCGCGCGTACACTTACACGTGCAGGGTGTACCAGGGCAGCACCTGGAAGGAGAACAGCATGGCATTCCACCAAAGAAATGTTCTGGTGTGCTCTGCATTGAGCGTATTCTTCCACACTGGACCGTGGATGTTTGCAGTTATGATATCACTTCCCATCTCTCTCGGGCTTCTGTCTGTTTGACTTCACTTCATCAAGCAGGCCAAAAGTCAAAGTCATTATCACATTTAACCACTTTTGGTATTTTAACTTCCgtgacttttttgtttgttttacaaccCCACTTAAAATGTATATGGTGATCGCCATCGTTACTGTATCAATATTCACTGTGAAATGGAATGCATCTGGCCCAAGCAAGTATACACTTTTAAAACAATGATCACAAACTAAGATGTTGTATAAATTTTTACATTGCCATTCAAAACCTTGGGGTCAGTATGGTtatttgtttaacagaaataaattaataatttactcAGCAAATTCAGCAAGGATGACATGTTTAAAGAtaagatctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctttacttTGGATAGGACAGTGAAGATTAAAAACAGGAAATTCCGATTTCCAATTCCCAAGCTGTGAATACAACTCGAGTTGCAGTGAACAGCATGTTATTATATAtcagcgcacttaaccactaggttTTGGTGCTGACAAGATATTAAACTTATAATATCTTAAGTATATTAaagtataaaagtatatattaaagTATAAAGTTATGAAGAATTTCTGTTTTAAAGGACGGGGAAATTCAGCTTTGCTGTCacatattcaaatataaaataatgtactgtataaatgTCCTGTATACATTTTTGTCCCCTAAAGGTTTATGGTTTATTTCAAGGGTTAAAAAAGACTTGAGCAGTTGTAGAGCGAACGTTCTAATGCCGAGCTGCTGAAAGCAACaacaaattaaacaacaaattaaaCACAATAGGCACTATCATcataaaaacacacagaaaatGATGCCACTCCAGCTGAAACTcagttaaaattacatttataatttctattaaaaatcaGTTTTCAAATCATACTTTTTTCTTCATGAATGTCTGATCTTTATtaatcttaaaataaattaagatttttttggtTATAGAAGGTAAAGCCCTAGAACACACCTATTTGATATGCAATTACAACAGACCAGTGGTAGTTCAGAAATGTTGGAGCTGAAGCAAACTAAAACGAATCAAACTCCATCTGATATTGTATAAAAAACATCACACCAGCTTGATCTTCAAGTTCATTCATTTTATCTTAGCTTgccatatttatcaggggtccccacaatggaatgaaccgccaactattctatcATATGTTTTagccagtggatgcccttccagctgcaacctagtactggaaagTTCTTTAAATTTGCTTTTAGCTGTTGATGCCTTAAatcttaaatttgtttaaaatttgtgggggctcgtccgggatcacAGTACATTTGAAGTATTATCATAATATCTTCTTTGCTTTTACCAATATTACCGACCCCAAACCTTTGAAATGTAATGTATTAATATACAATAGTTTAATCAAAACATTTCcagtcaaaatgatttttttttgtgtgtgtgtaatgaagtGATCATTTATAGTAAGATGAATGTAGCATGATTGTCAATTGCATTGAGATCAGATGAAAATTTTGCATAAATGTATCCACTGTAGCTTGAGACGATCAGCCATTCAGCATATCACCTACAGTATTCTCTGTTATAagaaatatacattattattttaatatatggcATAGGATCTTTATATTCAACTATGCGCTTCCTTCAAAACAAGTCATAGTAGCTCAAAAAGATGTTATACTTTTTATTCCTGACATTTTTGTAATCTTTATAGAAACAACTGAGTGAAATCCGTAATCTGTAATCTCATTGGTCAGTTGGCTGGTTTATTGATCCTTGCAATTTGTCCAGTACAAAATGCATTACACTACCTGATCATTGTCTGTTTATCACCTTTATAAGGACAACTCTGTTTGAAGGACATCACCACTGATGACATATTAAATTCCAATGCTCACACATGATGCAACTGAATATCCTGTACAACAGCTGAAGGACTTTTTTCAGTAACGTTTCAAGGAGAAGAATGACACAGACCTAGAACAGTACACAAGTGCATAAGAATGAGTCTAGCTCAATAACTATTCTGATGTACACTTACATATATTTATGTGTCTTCCATTATGCTTGCATGCACAGTGCAGATGCTGTAAGTACACGTTTAATTGCACTGTACTGTTTAGCTGCTCTTGCACATGCTTTTTTGCACCAACTTTAAGTGCCTTAAGTTGACTTAAGGTATAATCTGTGCTTTTGCAATGTAGtgctttgtttcatttttgaCCATAGTGACTCACAAAGACTGCGTAGCAATATGTTCAAGCACTAACACGCACATTTCACACACTAATTGTCTTTGTACTCTCTTCTTTTACTGTATCTTTCCATCACTTTGTCTTATCATTTAAAGGATCTACTGAGAAATGTCACAGAAAACAATAAAGGAATGTAGAGTGT

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0097272 ammonium homeostasis biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058959 True 3070 lncRNA 0.36 3 29784172 29792624

Neighbor

gene id symbol gene type direction distance location
XLOC_030152 ddx31 coding upstream 38606 29714786 ~ 29745566 (+)
XLOC_030151 tsc1a coding upstream 72224 29652198 ~ 29711948 (+)
XLOC_030150 NA coding upstream 218347 29560059 ~ 29565825 (+)
XLOC_030149 NA coding upstream 541012 29241794 ~ 29243160 (+)
XLOC_030148 CT956057.3 coding upstream 569526 29214530 ~ 29214646 (+)
XLOC_030154 thy1 coding downstream 1434 29794058 ~ 29803293 (+)
XLOC_030155 usf1l coding downstream 10756 29803380 ~ 29817848 (+)
XLOC_030156 f11r.2 coding downstream 27642 29820266 ~ 29825846 (+)
XLOC_030157 f11r.1 coding downstream 38571 29831195 ~ 29848772 (+)
XLOC_030158 ubash3ba coding downstream 58809 29851433 ~ 29896768 (+)
XLOC_030145 NA non-coding upstream 865211 28916519 ~ 28918961 (+)
XLOC_030141 CR559930.1 non-coding upstream 958032 28824612 ~ 28826140 (+)
XLOC_030159 NA non-coding downstream 109529 29902153 ~ 29988431 (+)
XLOC_030160 mir100-2 non-coding downstream 197523 29990147 ~ 29990221 (+)
XLOC_030161 dre-let-7a-4 non-coding downstream 197828 29990452 ~ 29990544 (+)
XLOC_030162 dre-mir-125b-2 non-coding downstream 206138 29998762 ~ 29998847 (+)
XLOC_030164 BX897688.1 non-coding downstream 373832 30166456 ~ 30166572 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G483696 NA non-coding CI01000339 null 5411325 ~ 5412235 (+)