XLOC_030156 (f11r.2)


Basic Information

Item Value
gene id XLOC_030156
gene name f11r.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 29820266 ~ 29825846 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058968
GCTTTCCTAATGTGCAGTTGGAGCTTCTAACCAGTTTCAGATAAGTTTCTGCTTATCTTCACTCAGTTTTGTGCGGACCTAGCAAATAAACAGCTGCAACACGGTTCTGCTAAAATAATATACTTTCGGGTAACATTTGAAACGCATACCGTAGAAAACCTTCTATCATTTCAGACTGGAAATGTTGACTTTAGTCTTTGTGTGTCTCTCTTTTTCACTCACAGGCCTACATGCTTCCTTTTCAGTGGCTGTTAATGGTCCCATAGTAAAAGTGAAGGAGAATGAGGGAGTTGACTTGCAATGTTCCTACACCGCTGACTTTGGAGCAACACCCAGAGTAGAATGGAAGTTCAGAAATCTGAAGGGCTTTCAGTATTTCATCTACTTTAATAACAAACCAACTGTTGAATATGAACAGCGCATCACTGTGTACGCTGGAGGACTGAGATTTCAAAAAGTAACGCGAGCAGACGCTGGAGATTATAACTGTGAGGTTTCTGGAAACGGTGGATATGGAGAGAATACCATCAAACTTGTAGTCTCTGTTCCTCCTTCCAAGCCTGTATCCAGCATTCCTTCATCAGTCACAACAGGCAGTAACGTCCGCCTGACTTGCTTTGACCCAGTTGGCTCTCCTCCATCCACCTATGAGTGGTACAAAGACAACAACCTCCTCCCTGAGGACCCAACCAAGTTTCCCATTTTTAAGAACCTCACATATAAGATGAATGCTTTCAATGGAAACCTGGAGTTCTTGAGTGTGTCTAAGTGGGATGCTGGCTCATATTTTTGTGTGGCCAGTAATGAAAACGGTGTCTCTCAGCATGGTGATGCAGTGAAGATGGAA
>TCONS_00058969
GCTTTCCTAATGTGCAGTTGGAGCTTCTAACCAGTTTCAGATAAGTTTCTGCTTATCTTCACTCAGTTTTGTGCGGACCTAGCAAATAAACAGCTGCAACACGGTTCTGCTAAAATAATATACTTTCGGGTAACATTTGAAACGCATACCGTAGAAAACCTTCTATCATTTCAGACTGGAAATGTTGACTTTAGTCTTTGTGTGTCTCTCTTTTTCACTCACAGGCCTACATGCTTCCTTTTCAGTGGCTGTTAATGGTCCCATAGTAAAAGTGAAGGAGAATGAGGGAGTTGACTTGCAATGTTCCTACACCGCTGACTTTGGAGCAACACCCAGAGTAGAATGGAAGTTCAGAAATCTGAAGGGCTTTCAGTATTTCATCTACTTTAATAACAAACCAACTGTTGAATATGAACAGCGCATCACTGTGTACGCTGGAGGACTGAGATTTCAAAAAGTAACGCGAGCAGACGCTGGAGATTATAACTGTGAGGTTTCTGGAAACGGTGGATATGGAGAGAATACCATCAAACTTGTAGTCTCTGTTCCTCCTTCCAAGCCTGTATCCAGCATTCCTTCATCAGTCACAACAGGCAGTAACGTCCGCCTGACTTGCTTTGACCCAGTTGGCTCTCCTCCATCCACCTATGAGTGGTACAAAGACAACAACCTCCTCCCTGAGGACCCAACCAAGTTTCCCATTTTTAAGAACCTCACATATAAGATGAATGCTTTCAATGGAAACCTGGAGTTCTTGAGTGTGTCTAAGTGGGATGCTGGCTCATATTTTTGTGTGGCCAGTAATGAAAACGGTGTCTCTCAGCATGGTGATGCAGTGAAGATGGAAGTTTATGATGTAGACAGCAGTCAAGTGCTGGATGTGAAGAGCAACTTGAGCATGGAGACACACAACATTCCAGGCAAGATCACCAACAGCCACATAATGGAAAAACAGTATGGCGTGTTCATGTTGCAGGAGGTGAAGCTAAAACTAGAGATCCAGAAACTGGAATTAGAAGTGACCAAGCTAAAGCTGGAGCTGCAAAAACTTGGACATGAAGTGTAGATGATATCATTCATCATTACTGCTATAAGTCAAAGAACTTATTTCATGTGCTGATTTCAGATgttattgtaattacatttgtttttatacagCTGGGGTCTGTTTTTCATACCTCACTTAAAAGATCTGTGATGATTTGACAGATATGGATTTTTTTCAGGATATCCGtgtggtcttaaagtcttaaatctcaaaaactcaaatttaagccttaaaatgtctttaatctACTGAAACATTATGTTGtaggtctctttttttttaacatgtctttttctttgtttatgtatAGCTACCCTATCTGGCTAAAACCCATACattcaccaacaatccatcacaataaaacttttaactttttattt

Function

symbol description
f11r.2 Predicted to be involved in establishment of endothelial intestinal barrier; intestinal absorption; and regulation of membrane permeability. Predicted to act upstream of or within cell adhesion. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction. Is expressed in several structures, including immature eye; integument; otic vesicle; pronephric duct; and sensory system. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human F11R (F11 receptor).

GO:

id name namespace
GO:0050892 intestinal absorption biological_process
GO:0090557 establishment of endothelial intestinal barrier biological_process
GO:0090559 regulation of membrane permeability biological_process
GO:0007155 cell adhesion biological_process
GO:0005923 bicellular tight junction cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-67 Predicted to be involved in establishment of endothelial intestinal barrier; intestinal absorption; and regulation of membrane permeability. Predicted to act upstream of or within cell adhesion. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction. Is expressed in several structures, including immature eye; integument; otic vesicle; pronephric duct; and sensory system. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human F11R (F11 receptor).

Ensembl:

ensembl_id ENSDARG00000068114

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058968 False 847 mRNA 0.43 6 29820266 29823240
TCONS_00058969 True 1428 mRNA 0.40 7 29820266 29825846

Neighbor

gene id symbol gene type direction distance location
XLOC_030155 usf1l coding upstream 2418 29803380 ~ 29817848 (+)
XLOC_030154 thy1 coding upstream 16973 29794058 ~ 29803293 (+)
XLOC_030153 NA coding upstream 27642 29784172 ~ 29792624 (+)
XLOC_030152 ddx31 coding upstream 74700 29714786 ~ 29745566 (+)
XLOC_030151 tsc1a coding upstream 108318 29652198 ~ 29711948 (+)
XLOC_030157 f11r.1 coding downstream 5349 29831195 ~ 29848772 (+)
XLOC_030158 ubash3ba coding downstream 25587 29851433 ~ 29896768 (+)
XLOC_030159 NA coding downstream 76307 29902153 ~ 29988431 (+)
XLOC_030160 mir100-2 coding downstream 164301 29990147 ~ 29990221 (+)
XLOC_030161 dre-let-7a-4 coding downstream 164606 29990452 ~ 29990544 (+)
XLOC_030150 NA non-coding upstream 254441 29560059 ~ 29565825 (+)
XLOC_030149 NA non-coding upstream 577106 29241794 ~ 29243160 (+)
XLOC_030148 CT956057.3 non-coding upstream 605620 29214530 ~ 29214646 (+)
XLOC_030145 NA non-coding upstream 901305 28916519 ~ 28918961 (+)
XLOC_030162 dre-mir-125b-2 non-coding downstream 172916 29998762 ~ 29998847 (+)
XLOC_030164 BX897688.1 non-coding downstream 340610 30166456 ~ 30166572 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_05426723_05430918 NA coding CI01000339 null 5426723 ~ 5431480 (+)