XLOC_030432 (pomt1)


Basic Information

Item Value
gene id XLOC_030432
gene name pomt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 51111343 ~ 51128031 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059462
GctggaacttttattttgaaatgtgggCGACACAGCCCGGAAACACTGGTGAACAGACCGTTgctttatttacagtgtttagtGGCTTTATTTAAAGCGTAAAGTTGTCGTATATGCCTAAGCAatggcattatttatttgtttttatttttcctgacCAATTCCAGTTTTAgcgaatatttttattcataatttactGCTAAAAGACAGCGCATGTGGTCGTAAAAGCAGCACTGTTCACCTATGATTGCGAAATTCCAGAGGAAAAACTGAATCAAGTCAGGATTGAGCATGCAGTGTGTTAAACTGCCCGTCAGTGTGACAGTGGAGATAAATGTGCTGCTGCTGGCGGTTACAGCACTTGCCCTCTTTACTCGACTTTATGGCATTCACTTTCCCAAAGCTGTAGTGTTTGATGAGGTTTATTATGGACAGTTCCTGTCATTGTACATGAAGCAGGTTTTTTTCATAGATGAAAGCGGTCCTCCTTTTGGACACATGATACTTGCTTTAGGAGCGTATTTAGGAGGATTTGATGGCAACTTTGTTTGGAACAGAATTGGAGCAGaatacCCTGGTAATGTCCCTGTTTGGAGCCTTCGACTGATACCGGCTCTGGCAGGCTCTTTTTGTGTGCCACTTGCATATCTTGTAGTAGTGGAGCTGGGATACTCCCACTTCTCGGCACTGGGGGCCTGTGCACTTCTCCTCATGGAAAACTCCCTGATTGTGCAATCGCGCTTCATGCTGCTGGAGTCTGTTTTAATTTTCTTCTTGCTGTTGGCTGTGCTGTCTTACCTCCGCTTTCACAAAGCACGCAACTCATTTTTCAAGTGGTTTTGGCTTGTGATCTGTGGGGTCAGCTGTGCATTCGGAATTGGagtaAAGTACATGGGTATGTTCACATACTTTCTACTGCTGAGCCTGGCAGCTGTACACACCTGGCAGCTTATTGGAGATCAAACCTTGAGCCATGGCAAAGTAATGTTCCAGGTATTGGTTCGCTTCCTGGCACTCGTGGTGCTACCTGTCATCATGTACCTTGGGTTTTTCTACATTCATCTGACCTTGCTATATCGCAGTGGACCTCATGACCAGATGATGAGCAGTGCCTTTCAAGCAAGTCTCGAGGGTGGTCTTGCCCGGATCACTCAGGGGCAGCCTTTAGATGTAGCATTTGGCTCACAGGTCACTCTCCGCACAGTCTCCGGTAAACCTGTGCCTTGTTGGCTTCACTCACACAAGGCCAACTATCCCATCAGgTATGAAAATGGCCGTGGAAGCTCCCACCAGCAGCAGGTGACCTGCTATCCTTTCAAAGATGTCAACAACTGGTGGATTATCAAAGACCCTGGGCGgcaaaGTCTTGTGGTCAGCAGCCCACCCAAACCTGTCAGACATGGGGATATTATTCAGTTGCTGCATGGAATGACAACTCGCTACCTGAACACACATGATGTTGCAGCCCCCATGAGTCCTCACTCACAGGAAGTGTCGGGCTATATTGATTTTAACGTGTCTATGCCAGCTCAGAATCTCTGGAGAGTGGATATTGTGAACAGGGAGTCTGAGAAAGAGATCTGGAAGACCATTTTATCAGAGGTGCGACTAGTCCACGTGAACACCTCAGCTGTTTTAAAGCTTAGTGGAGCCTCTCTGCCAGAGTGGGGTTTTAAACAGCTGGAGGTGGTGGGTGATAAGATTTATAAAGGCTACCAGCAGACCGGCATGTGGAACGTGGAGGAGCACCGCTATGGCAGAAGTCAGGAACCAAAGGAAAGGGAGTTGGAGCTGAAGTCTCCTACTCACAGCGATGTCAACAAAAATCTCACATTTATGGCCAAATTTCTGGAACTGCAGTGGAAGATGCTGACAGTAAAGAACGAAGAGTCAGAGCACAAATATAGTTCATCACCTCTTGAATGGATCACAATGGACACCAACATTGCATATTGGCTTCATCCTTCAAGTAATGCACAGATTCACTTTATAGGCAATATTGTTACTTGGACCACTGGAAACATTACACTGGTTGTGTACTGTCTTCTGTTTTTAACATACTTACTAAGACGGAGGAGGAAAGTTGAAGACATTCCACAAGACTCTTGGGAACAGTTGGTTTTGGCTGGTGTGGTTTGCTTAGGAGGCTGGGCAGTGAATTACCTGCCATTCTTCCTAATGGAGAAGACTCTCTTTCTATATCACTATCTCCCAGCACTGACCTTCAAGATCTTGCAAATACCTATAGTCACAGAGCACCTGTACATCCACGTATTGAGATCCTCAGCTCAACAGAAAGCATTTGGTGGTGTGATTTTAGCAGTTCTTTGTTCAGTATACATGTCCTACCACAGCTTGAGTCCTCTCACGTATGGCCAGCCAGCGTTAACATCAGACAAGCTCGCTGAGCTGCGCTGGAGGGAGAGTTGGGATATTCTCTTACGCAAACGCTAaaatatcctttattttttttaagacaagATAATTTCATGGTGTCAAAATTTCAAATCGAGATGACTGATAGGGCTGATGGATTTTTTGAGAAATGGATTCTGATTCGAAATGCATCACTTTTCTGTCTTGAATGGATTCTGAGCTCAGTGTTTAACAGGAGATTATACCACATGCTTTACAAACTCTGCTTGCTTCCaattccttacaaataccacATGAATCTAAAGTAATCAGTAATGAAGTTCAAATTAGGCaattacaaaagtgtttttagtGAGCTGTTTACATTAATCTTGTCATAAAGGCCAACTTACATGAAGCACAAGCAATATATGGTTTGAAAATTAGTCGAGTGCAacatgctgttaaaaactaagttTAGAATCACTTCAAGAGAGAATAGCAACGCATTTTGAATCAATTTTTCAATATTTCACCATAGTTTTCATGGATTTCCAGAAAGCTGTGAAGCACTATTTCTAGAGTCTGTGCCCAAACATAATAATGTGAAAAAACCCATGCTGCTGAATCTGAAAACTCTAAACCAAATGGACTCTGAAGCACAATTTCCGTGCTACATTTATCATGCTCGAATGTTTACATATTACTCTGTTTGTATAGcgattttattgtattgttttagaGACTGTTAAACTAATAAGATGCattgcatttctttaaatatgttttatttgattCTTGCACAACAGAAAAAAACGTTTAATAAACGTTTATATGACATTAAAA
>TCONS_00059463
AGCATGCAGTGTGTTAAACTGCCCGTCAGTGTGACAGTGGAGATAAATGTGCTGCTGCTGGCGGTTACAGCACTTGCCCTCTTTACTCGACTTTATGGCATTCACTTTCCCAAAGCTGTAGTGTTTGATGAGGTTTATTATGGACAGTTCCTGTCATTGTACATGAAGCAGGTTTTTTTCATAGATGAAAGCGGTCCTCCTTTTGGACACATGATACTTGCTTTAGGAGCGTATTTAGGAGGATTTGATGGCAACTTTGTTTGGAACAGAATTGGAGCAGaatacCCTGGTAATGTCCCTGTTTGGAGCCTTCGACTGATACCGGCTCTGGCAGGCTCTTTTTGTGTGCCACTTGCATATCTTGTAGTAGTGGAGCTGGGATACTCCCACTTCTCGGCACTGGGGGCCTGTGCACTTCTCCTCATGGAAAACTCCCTGATTGTGCAATCGCGCTTCATGCTGCTGGAGTCTGTTTTAATTTTCTTCTTGCTGTTGGCTGTGCTGTCTTACCTCCGCTTTCACAAAGCACGCAACTCATTTTTCAAGTGGTTTTGGCTTGTGATCTGTGGGGTCAGCTGTGCATTCGGAATTGGagtaAAGTACATGGGTATGTTCACATACTTTCTACTGCTGAGCCTGGCAGCTGTACACACCTGGCAGCTTATTGGAGATCAAACCTTGAGCCATGGCAAAGTAATGTTCCAGGTATTGGTTCGCTTCCTGGCACTCGTGGTGCTACCTGTCATCATGTACCTTGGGTTTTTCTACATTCATCTGACCTTGCTATATCGCAGTGGACCTCATGACCAGATGATGAGCAGTGCCTTTCAAGCAAGTCTCGAGGGTGGTCTTGCCCGGATCACTCAGGGGCAGCCTTTAGATGTAGCATTTGGCTCACAGGTCACTCTCCGCACAGTCTCCGGTAAACCTGTGCCTTGTTGGCTTCACTCACACAAGGCCAACTATCCCATCAGgTATGAAAATGGCCGTGGAAGCTCCCACCAGCAGCAGGTGACCTGCTATCCTTTCAAAGATGTCAACAACTGGTGGATTATCAAAGACCCTGGGCGgcaaaGTCTTGTGGTCAGCAGCCCACCCAAACCTGTCAGACATGGGGATATTATTCAGTTGCTGCATGGAATGACAACTCGCTACCTGAACACACATGATGTTGCAGCCCCCATGAGTCCTCACTCACAGGAAGTGTCGGGCTATATTGATTTTAACGTGTCTATGCCAGCTCAGAATCTCTGGAGAGTGGATATTGTGAACAGGGAGTCTGAGAAAGAGATCTGGAAGACCATTTTATCAGAGGTGCGACTAGTCCACGTGAACACCTCAGCTGTTTTAAAGCTTAGTGGAGCCTCTCTGCCAGAGTGGGGTTTTAAACAGCTGGAGGTGGTGGGTGATAAGATTTATAAAGGCTACCAGCAGACCGGCATGTGGAACGTGGAGGAGCACCGCTATGGCAGAAGTCAGGAACCAAAGGAAAGGGAGTTGGAGCTGAAGTCTCCTACTCACAGCGATGTCAACAAAAATCTCACATTTATGGCCAAATTTCTGGAACTGCAGTGGAAGATGCTGACAGTAAAGAACGAAGAGTCAGAGCACAAATATAGTTCATCACCTCTTGAATGGATCACAATGGACACCAACATTGCATATTGGCTTCATCCTTCAAGTAATGCACAGATTCACTTTATAGGCAATATTGTTACTTGGACCACTGGAAACATTACACTGGTTGTGTACTGTCTTCTGTTTTTAACATACTTACTAAGACGGAGGAGGAAAGTTGAAGACATTCCACAAGACTCTTGGGAACAGTTGGTTTTGGCTGGTGTGGTTTGCTTAGGAGGCTGGGCAGTGAATTACCTGCCATTCTTCCTAATGGAGAAGACTCTCTTTCTATATCACTATCTCCCAGCACTGACCTTCAAGATCTTGCAAATACCTATAGTCACAGAGCACCTGTACATCCACGTATTGAGATCCTCAGCTCAACAGAAAGCATTTGGTGGTGTGATTTTAGCAGTTCTTTGTTCAGTATACATGTCCTACCACAGCTTGAGTCCTCTCACGTATGGCCAGCCAGCGTTAACATCAGACAAGCTCGCTGAGCTGCGCTGGAGGGAGAGTTGGGATATTCTCTTACGCAAACGCTAa

Function

symbol description
pomt1 Enables dolichyl-phosphate-mannose-protein mannosyltransferase activity. Acts upstream of or within protein O-linked mannosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including digestive system; immature eye; muscle; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in cardiomyopathy; cleft lip; lissencephaly; and muscular dystrophy (multiple). Orthologous to human POMT1 (protein O-mannosyltransferase 1).

GO:

id name namespace
GO:0035269 protein O-linked mannosylation biological_process
GO:0006493 protein O-linked glycosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity molecular_function
GO:0000030 mannosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-966 Enables dolichyl-phosphate-mannose-protein mannosyltransferase activity. Acts upstream of or within protein O-linked mannosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including digestive system; immature eye; muscle; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in cardiomyopathy; cleft lip; lissencephaly; and muscular dystrophy (multiple). Orthologous to human POMT1 (protein O-mannosyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000067670

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059462 False 3201 mRNA 0.43 20 51111343 51128031
TCONS_00059463 True 2166 mRNA 0.47 19 51111766 51127284

Neighbor

gene id symbol gene type direction distance location
XLOC_030431 zgc:194398 coding upstream 6672 51102010 ~ 51104671 (+)
XLOC_030430 fam169aa coding upstream 14764 51079504 ~ 51096579 (+)
XLOC_030429 NA coding upstream 44115 51063548 ~ 51067228 (+)
XLOC_030428 gcnt4a coding upstream 81238 51026563 ~ 51030105 (+)
XLOC_030427 ankrd31 coding upstream 99957 51001985 ~ 51011386 (+)
XLOC_030433 ubac1 coding downstream 98815 51226846 ~ 51243925 (+)
XLOC_030434 msh3 coding downstream 120753 51248784 ~ 51440541 (+)
XLOC_030435 rasgrf2b coding downstream 314978 51443009 ~ 51581775 (+)
XLOC_030436 CR388055.2 coding downstream 427302 51555333 ~ 51555464 (+)
XLOC_030437 ckmt2b coding downstream 466178 51594209 ~ 51609006 (+)
XLOC_030424 NA non-coding upstream 294194 50815532 ~ 50817149 (+)
XLOC_030420 NA non-coding upstream 1332973 49753671 ~ 49778370 (+)
XLOC_030418 NA non-coding upstream 1705623 49383853 ~ 49405720 (+)
XLOC_030417 NA non-coding upstream 1709226 49220633 ~ 49402117 (+)
XLOC_030438 NA non-coding downstream 537463 51665494 ~ 51668609 (+)
XLOC_030439 NA non-coding downstream 640226 51768257 ~ 51768882 (+)
XLOC_030440 CT033828.1 non-coding downstream 682778 51810809 ~ 51810925 (+)
XLOC_030444 NA non-coding downstream 884852 52012883 ~ 52027731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000080_00280496_00291405 POMT1 coding CI01000080 null 280233 ~ 291603 (+)