XLOC_030438


Basic Information

Item Value
gene id XLOC_030438
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 51665494 ~ 51668609 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061459
gtttttaattaggGCTGTAACTCAACTCTGCAGGatagtggccctccaggaacaggtttgtttagttcagatttttgaaaatCTAAGTACAGGAatagagtatgtatggctttatatatatataaatattgagtTAGACAATTTGAGTTTTCCTACTTCCTTTAAAATAACCTATGGAAATAATGCTTAGAACACTTACTTGAAGTTTGATATCCAATCTGTAAACTTAAGGAAGATTAAAGAATTCCAACTTCAGCAAGACGCACCATTTGACATCACTTCGCAGATGGCAGCTGGTTCTTCTTCTGCAAGATTAGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061459 True 319 lncRNA 0.35 2 51665494 51668609

Neighbor

gene id symbol gene type direction distance location
XLOC_030437 ckmt2b coding upstream 56488 51594209 ~ 51609006 (+)
XLOC_030435 rasgrf2b coding upstream 83719 51443009 ~ 51581775 (+)
XLOC_030436 CR388055.2 coding upstream 110030 51555333 ~ 51555464 (+)
XLOC_030434 msh3 coding upstream 224953 51248784 ~ 51440541 (+)
XLOC_030433 ubac1 coding upstream 421569 51226846 ~ 51243925 (+)
XLOC_030439 NA coding downstream 99648 51768257 ~ 51768882 (+)
XLOC_030440 CT033828.1 coding downstream 142200 51810809 ~ 51810925 (+)
XLOC_030441 tent2 coding downstream 164523 51833132 ~ 51847896 (+)
XLOC_030442 cmya5 coding downstream 180147 51848756 ~ 51884775 (+)
XLOC_030443 thbs4a coding downstream 241131 51909740 ~ 51945554 (+)
XLOC_030429 NA non-coding upstream 598266 51063548 ~ 51067228 (+)
XLOC_030424 NA non-coding upstream 848345 50815532 ~ 50817149 (+)
XLOC_030420 NA non-coding upstream 1887124 49753671 ~ 49778370 (+)
XLOC_030418 NA non-coding upstream 2259774 49383853 ~ 49405720 (+)
XLOC_030444 NA non-coding downstream 344274 52012883 ~ 52027731 (+)
XLOC_030446 AL935198.1 non-coding downstream 386618 52055227 ~ 52057554 (+)
XLOC_030448 FP016029.1 non-coding downstream 557075 52225684 ~ 52225805 (+)

Expression


Co-expression Network