XLOC_030439



Basic Information


Item Value
gene id XLOC_030439
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 51768257 ~ 51768882 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00061460
GAGCAACATGATTTTGTCCTTGTCTCCAGCAGGATGAAGCATTTGTGAACCAGATGCGACATCAGAATGAGCAGCCTGTGGAGGTTGTGGCCAGTAGGGGACAAAATCAGATCCCTGAACCACAGCCTGAGGAGCAGCAACAGAATGAATCTGAGAGACCTCAGCAGATAGATTTAGTAATAAATGGAAGAGTCCGTGGGGTTCTGCGTGGTCTTCAGTCTGCTCGTCCTCTCAGAAGAATGAGAGAACAGCAGGACAACATTGTTAATCTCCAGAACCCTCCACTCCGGCAACCACGGCCTGGTCCACCGCCTACCTACATTCGCAGGACGGTGGTGGGCAGCATTGGAGATTTTCCACGCCATTGATGAGGAGCCTGAAATTCAGCCTcaaagatgaacaaataaattaataaagag

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00061460 True 419 lncRNA 0.49 2 51768257 51768882

Neighbor


gene id symbol gene type direction distance location
XLOC_030438 NA coding upstream 99648 51665494 ~ 51668609 (+)
XLOC_030437 ckmt2b coding upstream 159251 51594209 ~ 51609006 (+)
XLOC_030435 rasgrf2b coding upstream 186482 51443009 ~ 51581775 (+)
XLOC_030436 CR388055.2 coding upstream 212793 51555333 ~ 51555464 (+)
XLOC_030434 msh3 coding upstream 327716 51248784 ~ 51440541 (+)
XLOC_030440 CT033828.1 coding downstream 41927 51810809 ~ 51810925 (+)
XLOC_030441 tent2 coding downstream 64250 51833132 ~ 51847896 (+)
XLOC_030442 cmya5 coding downstream 79874 51848756 ~ 51884775 (+)
XLOC_030443 thbs4a coding downstream 140858 51909740 ~ 51945554 (+)
XLOC_030444 NA coding downstream 244001 52012883 ~ 52027731 (+)
XLOC_030429 NA non-coding upstream 701029 51063548 ~ 51067228 (+)
XLOC_030424 NA non-coding upstream 951108 50815532 ~ 50817149 (+)
XLOC_030420 NA non-coding upstream 1989887 49753671 ~ 49778370 (+)
XLOC_030446 AL935198.1 non-coding downstream 286345 52055227 ~ 52057554 (+)
XLOC_030448 FP016029.1 non-coding downstream 456802 52225684 ~ 52225805 (+)
XLOC_030449 BX957336.2 non-coding downstream 669510 52438392 ~ 52442492 (+)

Expression



Co-expression Network