G1190104


Basic Information

Item Value
gene id G1190104
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56772866 ~ 56779738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1357443
gttacagtaggtcacctccttgagacacaataacacactgaactgttgcagttgttcacttcctagagacactataacacactgaactgttacagtagttcacctccttgagacacaatgacacactgaactgttacagtagttcacatcctagagacactataacacactgaacttttacagtagttcacctccttgaaacactataacacactgaactgttacagtagttcacctcctagagagagacaatatgacacactgaactgttacagtagttcacctccgagagagagacaatatgacacactgaactgttacagtagttcacctccgagagagagacactatgacacactgaactgttacagtagttcacctcctagagacactataacaaactgaactgttacagtagttcacctcctagagacactataacacactgaactgttacagtagttcacctcctagagacactataacacactgaactgttacagtagttaccctcctagagacactataacacactgaactgttacagtatttaatgtcttagagaaactataacacactgaactgttacagtagttcaactcctggtgacactataacacactgaactgttacaatagttcacctactaaatagagacacaataacacactgaactgttacagtagttcatatcctagtgacactataacacactgaactgttacattaGTTCACCTtcaagagacacaataacacacggaactgttacagtatttcatgtcttagagaaactataacacactgaactgttacagtagttcaactcctggtgacactataacacactgaactgttacagtagttcacctccgagagagatacactataacacactgaactgttacagtagttcacctcttagagacactataaaacactgaactgttacattaGTTCACCTtcaagagacacaataacacacggaactgttacagtatttaatgacttagtgagagacactataacacactgaactgttacagtagttcacctcctagagacactataacaaactgaactgttacagtagttcacttcttagagacactataacacactgaacttttacagtagttcacctcctagagacactataacacactgaacttttacagttgttcacctcctggtgacaatataacacactgaactgttacagtagttcacctcctagagagagacactatgacacactgaactgttacaattgttcacttcctagagacactataacacactgaaatgttacagtaggtcacctccttgagacacaataacacactgaactgttgcagttgttcacttcctagagacactataacacactgaactgttacagtagttcacttcctagagacactataacacactgaactgttacagtagttcacctccttgagacacaacagtacactgaactgttacagtagttcaactcctagagacactataacacactgaactgttacagtagttcacctcagagagagatacactataacacactgaactgttacagtagttcacctcttagagacactataaaacactgaactgttacattaGTTCACCTtcaagagacacaataacacacggaactgttacagtatttaatgacttagtgagagacactataacacactgaactgttacagtagttcacctcctagagacactataacaaactgaactgttacagtagttcacttcttagagacactataacacactgaacttttacagtagttcacctcctagagacactataacacactgaacttttacagttgttcacctcctggtgacaatataacacactgaactgttacagtagttcacctcctagagagagacactatgacacactgaactgttacaattgttcacttcctagagacactataacacactgaaatgttacagtaggtcacctccttgagacacaataacacactgaactgttgcagttgttcacttcctagagacactataacacactgaactgttacagtagttcacttcctagagacactataacacactgaactgttacagtagttcacctccgagagagagacactatgacacactgaactgttacagtagttcacctccttgaaacactataacacactgaactgttacagtagttcacctcctagagacactataacacactgaactgttacagtagttaccctcctagagacactataacacactgaactgttacagtatttaatgtcttagagaaactataacacactgtactgttacagtagttcaactcctggtgacactataacacactgaactgttacagtagttcacctcctagagagagacaatatgacacactgaactgttacagtagttcacctcttagagacactataacacactgaactgttacagtagttcacctccttgaaacactataacacactgaactgttacagtagttcacctcctagagagagacaatatgacacactgaactgttacagtagttcacctccgagagagagacaatatgacacactgaactgttacagtagttcacctccgagagagagacactatgacacactgaactgttacagtagttcacctcctagagacactataacaaactgaactgttacagtagttcacctcctagagacactataacacactgaactgttacagtagttcacctcctagagacactataacacactgaactgttacagtagttaccctcctagagacactataacacactgaactgttacagtatttaatgtcttagagaaactataacacactgaactgttacagtagttcaactcctggtgacactataacacactgaactgttacaatagttcacctactaaatagagacacaataacacactgaactgttacagtagttcatatcctagtgacactataacacactgaactgttacattaGTTCACCTtcaagagacacaataacacacggaactgttacagtatttcatgtcttagagaaactataacacactgaactgttacagtagttcaactcctggtgacactataacacactgaactgttacaatagttcacctactaaatagagacacaataacacactgaactgttacagtagttcatatcctagtgacactataacacactgaactgtttcagtagttcacctcctagagagagacactatgacacactgaactgttacagtagttcacctcctagagagagacactataacacactgaactgttaaagtagttcacctcctagagagagacactataacacactgaactgttacagtagttcacctcctagagagagacactatgacacactgaactgttacaattgttcacttcctagagacactataacacactgaaatgttacagtaggtcacctccttgagacacaataacacactgaactgttgcagttgttcacttcctagagacactataacacactgaaatgttacagtagttcacatcctggtgacactaaaacacactgaactgttacagtagttcacctccttgagacacaacagtacactgaactgttacagtagttcaactcctagagacactataacacactgaactgttacagtagttcacctccgagagagatacactataacacactgaactgttacagtagttcacctcttagagacactataaaacactgaactgttacattaGTTCACCTtcaagagacacaataacacacggaactgttacagtatttaatgacttagtgagagacactataacacactgaactgttacagtagttcacctcctagagacactataacacactgaacttttacagtagttcacctcctagagacactataacacactgaacttttacagttgttcacctcctggtgacaatataacacactgaactgttacagtagttcacctcctagagagagacactatgacacactgaactgttacagtagttcacttcttagagacactataacacactgaacttttacagtagttcacttcttagagacactataacacactgaacttttacagtagttcacctcctagagacactataacacactgaacttttacagttgttcacctcctggtgacaatataacacactgaactgttacagtagttcacctcctagagagagacactatgacacactgaactgttacaattgttcacttcctagagacactataacacactgaaatgttacagtaggtcacctccttgagacacaataacacactgaactgttaaagttgttcacttcctagagacactataacacactgaactgttacagtagttcacttcctagagacactatgacacactgaactgttacagtagttcacctccttgaaacactataacacactgaactgttacagtagttcacctcttagaaacactataacacactgaacttttacagtagttcccctcctagagacactataaaacacTGGACTGCTAGAGTAtttcacctccaagagacactataacacactgaactgttacactaGTTcaactcctagagagagacactataacacactgagctGTTACAGTAGATCACCTCATTGAGACACAAtaaaacactgaactgttacagtagttcacctcctggagagatacactataacacactgagatgttacagtagttcacccacgagagagagagacactatgacacactgaactgttacagtagttcacctccttgagacacaataacacactgaactgttacagtagttcacctcctagagacacaataacacactgaactgttacagtatttcatgtcttagtgttagacactataacacactgaactgttacagtagttcacctcccaggagacaatataacacactgaactgttacagtagttcacctccttgaaacACTATAActtactgaactgttacagtagttccacACCTAGAGACactttaacacactgaactgttacagtagttcccctgctagagacactataaaacactgaactgttacaccaGTTCAagtcctagagagagacactataacacactgaactgttacagtagatcacctccttgagacacaataacactctgaactgttacagtagttcacctcctagagagatacactataacacactgaactgttacagtagttcacctcttagagacactataacacactgaactgttacagtagttcagcttCAAGAGACACACTAccacacggaactgttacagtatttaatGTCTTAgggagagacactataacacactgaactgttacagtagttcacctcctttaGACACagcagtacactgaactgttacagtagttcacctcctagagagagacactatgacacactgaactgttgcagtagttcacctcctagagacactatgacacactgaactattacagtagttcacctcctagagagagacactacaacacactgaactgttacagtagttcacctcctagagagagacactacaacacactgaactgttacaattgttcacttcctagagacactataacacactgaactgttacactaGTTcaactcctagagagagacactataacacacagagCTGTTACAGTAGATCACCTCATTGAGACACAAtaaaacactgaactgttacagtagttcacctcctggagagagacactatgacacactgaactgttacaattgttcacctcctagagacactataacacactgaaatgttacagtaggtcacctccttgagacacaataacacactgaactgttgcagttgttcacttcctagagacactataacacactgaactgttacagtagttcacttcctagagacactataacacactgaactgttacagta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1357443 True 6012 lncRNA 0.39 3 56772866 56779738

Neighbor

gene id symbol gene type direction distance location
LOC110515093 LOC106606674 coding downstream 521941 56226179 ~ 56250925 (-)
LOC110539043 LOC106601829 coding downstream 569056 56125290 ~ 56203810 (-)
LOC110485237 LOC106606659 coding downstream 661895 56088292 ~ 56110984 (-)
LOC110486851 LOC106606669 coding downstream 736044 56029421 ~ 56036822 (-)
LOC110538789 LOC106606674 coding downstream 1220366 55533247 ~ 55574537 (-)
LOC110486859 srebf1 coding upstream 131627 56911365 ~ 56957646 (-)
LOC110486860 tom1l2 coding upstream 182339 56960592 ~ 57007990 (-)
LOC110486894 LOC106601810 coding upstream 274715 57054453 ~ 57085521 (-)
nduba LOC106601814 coding upstream 314574 57094312 ~ 57099778 (-)
LOC110485244 LOC106601809 coding upstream 333171 57112909 ~ 57129442 (-)
G1190101 NA non-coding downstream 53537 56703298 ~ 56719329 (-)
G1189568 NA non-coding downstream 197418 56575194 ~ 56575448 (-)
G1189564 NA non-coding downstream 201498 56571051 ~ 56571368 (-)
G1189563 NA non-coding downstream 202306 56570314 ~ 56570560 (-)
G1189532 NA non-coding downstream 229726 56452331 ~ 56543140 (-)
G1190109 NA non-coding upstream 2357 56782095 ~ 56788604 (-)
G1190108 NA non-coding upstream 18729 56798467 ~ 56801654 (-)
G1190119 NA non-coding upstream 22936 56802674 ~ 56802917 (-)
G1190122 NA non-coding upstream 27669 56807407 ~ 56807638 (-)
G1190123 NA non-coding upstream 27951 56807689 ~ 56808113 (-)
G1189660 LOC106601786 other downstream 98628 56670293 ~ 56674238 (-)
G1189279 LOC106601786 other downstream 856981 55912224 ~ 55915885 (-)
LOC110485238 LOC106601829 other downstream 1317632 55434816 ~ 55509918 (-)
LOC110516592 LOC106601772 other downstream 1560151 55209614 ~ 55242150 (-)
G1190199 LOC106601813 other upstream 309433 57089171 ~ 57089915 (-)
G1190405 NA other upstream 716250 57495988 ~ 57499155 (-)
LOC110486915 LOC106606556 other upstream 919513 57698059 ~ 57706813 (-)
G1190628 NA other upstream 1186399 57964952 ~ 57994099 (-)

Expression


Co-expression Network