G1190109


Basic Information

Item Value
gene id G1190109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56782095 ~ 56788604 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1357450
aactgttacagtagttcacctcctagagagatacactataacacactgaactgttacagtagttcacctccgagagagagaaacattaacacactgaactgttacagttgttcacttcctagagacactataacacactgaactgttacagtaggtcacctcctagagagagacactatgacacactgaactgctacagttgttcacttcctagagacactataacacactgaactgatacagtagttcacctcctagagagatacactataacacactgaactgttacagtagttcacctcctagagagatacacattaacacactaaactgttacagtagttcacctcctagagagagacactatgacacactgaactgctacagttgttcacttcctagagatactataacacactgaactattgaaggagttcacatcctggtgacacttttatcacactgaactgttacagtagttcatctccttgagacactataacacactgaactgttacagcagttcacctcctagagagagacactatgacacactgaactgttacagtagttcacctccaagagacactataacacactgaactgttacagtagttcacctcctagagagagacactataacacactgaactgttacagtagttcacctcctagagagagacactatgacacactgaactgttacagtaggtcacctcctagagagagacactatgacacactgaactgttacaattgttcacttcctagagacactataacacactgaaatgttacagtagttcacatcctggtgacactaaaacacactgaactgttacagtagttcacatcctggtgacactaaaacacactgaactgttacagtagttcacctccttgagacacaacagtacactgaactgttacagtagttcaactcctagagacactataacacactgaactgttacagtagttcacctccgagagagatacactataacacactgaactgttacagtagttcacctcttagagacactataaaacactgaactgttacattagttcacctccttgagacacaataacacactgaactgttgcagttgttcacttcctagagacactataacacactgaaatgttacagtagttcacatcctggtgacactaaaacacactgaactgttacagtagttcacctccttgagacacaacagtacacttaactgttacagtagttcaactcctagagacactataacacactgaactgttacagtagttcacctccgagagagatacactataacacactgaactgttacagtagttcacctcttagagacactataaaacactgaactgttacattaGTTCACCTtcaagagacacaataacacacggaactgttacagtatttaatgacttagtgagagacactataacacactgaactgttacagtagttcacctcctagagacactataacaaactgaactgttacagtagttcacctcttagagacactataacacactgaacttttacagttgttcacctcctagagacactataacacactgaacttttacagttgttcacctcctggtgacaATATAACACAccgaactgttacagtagttcacctcctagagagatacactataacacactgaactgttacagttgttcacttcctagagacactataacacactgaactgttacagtaggtcacctcctagagagagacactatgacacactgaactgctacagttgttcacttcctagagacactataacacactgaactgatacagtagttcacctcctagagagatacactataacacactgaactgttacagtagttcacctcctagagagatacacattaacacactaaactgttacagtagttcaactcctagagagagacactatgacacactgaactgctacagttgttcacttcctagagatactataacacactgaactgttacagtagttcacatcctggtgacactataacacactgaactgttacagtagttcacctactagagagagacactatgacacactgaactgctacagttgttcacttcctagagatactataacacactgaactgttacagtaggtcacctcctagagagagacactatgacacactgaactgctacagttgttcacttcctagagatactataacacactgaactgttacagtagttcacatcctggtgacactataacacactgaactgttacagtagttcacctcctagagacactataacacactgaactgatacagtagttcacctcctagagacacaataacacacggaactgtaacagtatttcatgtcttagagaaactataacacactgaactgttacagtagttcaactcctggtgacactataacacactgaactgttacaatagttcacctactaaatagagacacaataacacactgaactgttacagtagttcatatcctagtgacactataacacactgaactgtttcagtagttcacctcctagagagagacactatgacacactgaactgttacagtagttcacctcctagagagagacactatgacacactgaactgttacaattgttcacttcctagagacactataacacactgaactgttaaagtagttcacctcctagagagagacactataacacactgaactgttacagtagttcacctcctagagagagacactatgacacactgaactgttacaattgttcacttcctagagacactataacacactgaaatgttacagtaggtcacctccttgagacacaataacacactgaactgttgcagttgttcacttcctagagacactataacacactgaaatgttacagtagttcacatcctggtgacactaaaacacactgaactgttacagtagttcacctccttgagacacaacagtacactgaactgttacagtagttcaactcctagagacactataacacactgaactgttacagtagttcacctccgagagagatacactataacacactgaactgttacagtagttcacctcttagagacactataaaacactgaactgttacattaGTTCACCTtcaagagacacaataacacacggaactgttacagtatttaatgacttagtgagagacactataacacactgaactgttacagtagttcacctcctagagacactataacaaactgaactgttacagtagttcacttcttagagacactataacacactgaacttttacagtagttcacctcctagagacactataacacactgaacttttacagttgttcacctcctggtgacaatataacacactgaactgttacagtagttcacctcctagagagagacactatgacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1357450 True 3453 lncRNA 0.40 2 56782095 56788604

Neighbor

gene id symbol gene type direction distance location
LOC110515093 LOC106606674 coding downstream 531170 56226179 ~ 56250925 (-)
LOC110539043 LOC106601829 coding downstream 578285 56125290 ~ 56203810 (-)
LOC110485237 LOC106606659 coding downstream 671124 56088292 ~ 56110984 (-)
LOC110486851 LOC106606669 coding downstream 745273 56029421 ~ 56036822 (-)
LOC110538789 LOC106606674 coding downstream 1229595 55533247 ~ 55574537 (-)
LOC110486859 srebf1 coding upstream 122761 56911365 ~ 56957646 (-)
LOC110486860 tom1l2 coding upstream 173473 56960592 ~ 57007990 (-)
LOC110486894 LOC106601810 coding upstream 265849 57054453 ~ 57085521 (-)
nduba LOC106601814 coding upstream 305708 57094312 ~ 57099778 (-)
LOC110485244 LOC106601809 coding upstream 324305 57112909 ~ 57129442 (-)
G1190104 NA non-coding downstream 2357 56772866 ~ 56779738 (-)
G1190101 NA non-coding downstream 62766 56703298 ~ 56719329 (-)
G1189568 NA non-coding downstream 206647 56575194 ~ 56575448 (-)
G1189564 NA non-coding downstream 210727 56571051 ~ 56571368 (-)
G1189563 NA non-coding downstream 211535 56570314 ~ 56570560 (-)
G1190108 NA non-coding upstream 9863 56798467 ~ 56801654 (-)
G1190119 NA non-coding upstream 14070 56802674 ~ 56802917 (-)
G1190122 NA non-coding upstream 18803 56807407 ~ 56807638 (-)
G1190123 NA non-coding upstream 19085 56807689 ~ 56808113 (-)
G1190175 NA non-coding upstream 170104 56958708 ~ 56958908 (-)
G1189660 LOC106601786 other downstream 107857 56670293 ~ 56674238 (-)
G1189279 LOC106601786 other downstream 866210 55912224 ~ 55915885 (-)
LOC110485238 LOC106601829 other downstream 1326861 55434816 ~ 55509918 (-)
LOC110516592 LOC106601772 other downstream 1569380 55209614 ~ 55242150 (-)
G1190199 LOC106601813 other upstream 300567 57089171 ~ 57089915 (-)
G1190405 NA other upstream 707384 57495988 ~ 57499155 (-)
LOC110486915 LOC106606556 other upstream 910647 57698059 ~ 57706813 (-)
G1190628 NA other upstream 1177533 57964952 ~ 57994099 (-)

Expression


Co-expression Network