XLOC_033152


Basic Information

Item Value
gene id XLOC_033152
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49100879 ~ 49104192 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065226
AATGGCGCCGCCTCATCAGGGGAGGGTTTGCCCAACTTGTTCAGATTTGCAAAGAGGGGGAAGTAGACGATCGAGAAAGGCACCGGAAGAAGTCATTCGCTGCCAGTTTGATGGCCTTCTCAGGAGTGACCAGGGTAAGATTAACCGCAGCTcctaaaagacaaacaaacagaggGTTAAAGAAAACCACAACTGATCACAGATCAGCAGCAAACACATTCCCCACCACCATCAAACCAGATATAAATGTACAACATGACCTTATCAAATACCATTCAAACAGTAGGAAGACTAAAATACCACTAACGGACTGAAAAATAAGCAAAGCTTATAACAGAACtgtaagatgatgatgatgatgatggagggGGATTTTACAtgatatgaaaacaaaaaactaaataactaGTACATAACAGGTAGTACAGAAATAGGCAGAACATTGAGATGAATATAGTGAGACAAGTGAATGCAGGCACATTCCAGAAAGAGACTGACATTAGGGCTGTGTAGTATGACAATATACTCAATTGAAGCATGGAGCGTGTCAAATTAAAGAGTTTGCAGAGCTGTTAGGGCAGCATTAAATTGGTCTACAATAAGAAAACAATCAGTCAGCAACGTCTTGAAATGTGCCAACCATAGCATTAACAGAGCAGATAAACCAATGATGGTTTCAAATGTTGCTTAATTACATTTGTACTGCAACTTGAATAGTTTTTGTAACCGAAGAAGTGAAAATCGGTTGTTTTTTTACACTTACACCAGCCCTTTATATACAAGGTTGTTCAAATCGACTTTACTAAGTAAAGTTACTTTTCtgcaaattattttgtgaagcaTTTTGCCTCATTACATTATCAAGATCAGGCACTGTAACACATATCAAAGACTTCAGAGGTAAAATATTTTCATACTGCCCAGTCCTAACTGAGACCATGTTATTTTAAGATATCACTGTCTTGAATTACAAACTGATCTTAAAAGACAGAACAGAAAATGAACGTAAAGTGATAGTGGAAAAATATCTAACCAAACATTCTAGATGTTAACAGAACATGGCAAGATGGGTTAGTACTGAATGAGACCAGAGCAAGGAGAGTGAAGAAAGTGGAAGATGAAAAACAAAATAGATgagtctataaaaaaaaaaagcagcaaaataagtataatattattcaacaattatctatataaataaataaaatcaaaataaagttggTGCCTAATTGTAATAAAGCAGAGTGGGTAAGAACCATGATAAATGATTTGCCTCCAGCGTGGCTGCGCCTTATCGGCTAGCCTTCATTATCCCAGCGGGGACCCATGTCTGTAACATGAAAAACACAGATGCAAACAACAGCATTCCTCACAGAAACGGAGACCCGGCACAAAACACCGACTCCAATCTCCAAACACTCTTCAAGGACACTTATAGTAGCACAACTCAAGCCAAATCTACCAGATGTAATAACAACATGCATGACTCGCTTCATTTTTACCCTCTGATGCATTATtcattacaaaaaatgtatttatttgagaGGATTATTGAATTCAAAAACTATTTCTTGCTAAATATATTGTTTGCCTATTAAAAATAGAAGGTAAAAGGTAAAATTTAAAGAGGGTGGATCAGCAGTTACACGTTGAACATACAATCATGAATTAAAACTAGGATTTATTGTCTAAATTTATACTTTAATAATGTGCAAGCTGACCCAGACTGTCAAAATATTGGAGTTTGATCTTATGTGTTAATATCCATACCCATTATAAAATGAGAACTCGTATAGAATTATGCATGAGATTCAAATCACACAATATTGACTTACATACAATCCAGAATGGTTAAAATACACATGAATCAGAGGGCTAAAAATAAGATGTATTCAAGTTTAGACTGTTAGCATGGCCATTTACAAGCCAAAGTTCTCTCTAATATAAGATAGTTAACCGAAATGCTTCAATATTGCCATTTCAGCGCTACAAAGAGCCAAAAAAATAGTTAATTATCCATCGTCAGCCAATCTACTCTAATTCATTTTCCAAAACCATGGACTGGATTCTCTCAGGTCTATTCAGGTGTACCCATCATGCCGTTTAAGAGTCTATGCTGATCTAACATGTCAATAGAGTGAATCTTACCTCTATACATGCCAAAGTATCCTTCAGTTCGTACTGTTTTGATGAGGCAGTCAATCCTGAGAAACAAACAAAGATGTTAACATAATGAAGGGGTTTATATGTTAGTATCCCTATTGTTATTTCTTAAGATATCTACAAGCGAGTGTGCTCCAA

Function

GO:

id name namespace
GO:0007508 larval heart development biological_process
GO:0048569 post-embryonic animal organ development biological_process
GO:0042221 response to chemical biological_process
GO:0002164 larval development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065226 True 2301 lncRNA 0.36 2 49100879 49104192

Neighbor

gene id symbol gene type direction distance location
XLOC_033151 slc5a8l coding downstream 22177 49063289 ~ 49078702 (-)
XLOC_033150 si:ch211-105j21.9 coding downstream 37794 49061077 ~ 49063085 (-)
XLOC_033149 NA coding downstream 151364 48914868 ~ 48949515 (-)
XLOC_033148 CU137649.1 coding downstream 488729 48612034 ~ 48612150 (-)
XLOC_033147 ppm1j coding downstream 627185 48425366 ~ 48473694 (-)
XLOC_033153 tspan2a coding upstream 2856 49107048 ~ 49159207 (-)
XLOC_033154 ngfb coding upstream 65228 49169420 ~ 49215827 (-)
XLOC_033155 BX569793.1 coding upstream 206716 49310908 ~ 49322532 (-)
XLOC_033156 rplp2 coding upstream 404613 49508805 ~ 49510553 (-)
XLOC_033157 rps26l coding upstream 415932 49520124 ~ 49526510 (-)
XLOC_033145 CU469362.1 non-coding downstream 719656 48380245 ~ 48381223 (-)
XLOC_033141 NA non-coding downstream 1039220 47979305 ~ 48061659 (-)
XLOC_033138 AL929512.1 non-coding downstream 1498164 47602599 ~ 47602715 (-)
XLOC_033163 NA non-coding upstream 656163 49760355 ~ 49771639 (-)
XLOC_033167 BX629346.2 non-coding upstream 814062 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 non-coding upstream 815744 49919936 ~ 49921857 (-)
XLOC_033171 CU928043.1 non-coding upstream 1031127 50135319 ~ 50135437 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G23354 NA non-coding NC_053113.1 CM020910.1 42337662 ~ 42337866 (-)
eurasian perch (Perca fluviatilis) tspan2a tspan2 misc NC_053115.1 CM020912.1 25723968 ~ 25740106 (-)
striped catfish (Pangasianodon hypophthalmus) G26788 LOC108271946 non-coding NC_047596.1 CM018542.1 13510376 ~ 13568936 (-)