si:dkey-7k24.5 (LOC106565339)


Basic Information

Item Value
gene id si:dkey-7k24.5
gene name LOC106565339
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 53686160 ~ 53696488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568797.2
gagaGCGAAAGCCATTGCAGTATATTTCCCGATGGCACTTAGAATCCCATTATGGGGATAGTTGCTGAACAAACTCTGTGTCAAAACAATTCAGAATGATAGCCTATCTTTTCTAAAAATCGAAATACTGAGATAAACGAAATCCCCTGGTATCAACTTTGGCGTGTGAACACAGCTCTGCGATTTTACAGGTGTTAGCCGCGGCGCTAAGTCCCACAGAAATACTAGTCTAGGCCAATAGTCATGCACCAGTTCAGTTATACTGTTACCGGCCGCTGGCTCTACTCCTGTGTCGTGCTGCTAGTTTTCCTGGTCGTCCCGAACGAGGCAGGGTGTCAGGACACGGGTTTTTGCTGCACTGGGCACGACCGGTCGTGCGTCAGTAAGGGATGGAGAGCTGACCGTTCGTATGGCACCTGCTATTGCGACCAGGCTTGTACCTCTACTATGGACTGCTGTCATGATTATGAATTCGCCTGTCCAGtGGTGTCCTGTGTGCTGAGTGAGTGGACTGCGTGGTCTGGCTGTGGTGAGCCCTGCAGGGCCACAGTTCGGATAAGGAGCAGGGAAGTCCTGCAGGAGCCCCGAAATGGGGGGAAACCCTGTCCACACGTGGAGGAGCACGCCGGCTGTGCAGAGTACAGAGAACACCACCGACAGTGCAGCAAATCACTAGTCCCGGCTCTCATCACTACCGGTGGCTATGGCAATGCCAGGAAGAAGAGGGATATCCCTGATAACAGTGATGTCAAAGGGTACTGTGTGCAGTTCCAGCTGACCTCCCTGACCCCTGGGTGCCAGCGTAGTGTGGGGCCACACACCCGCTGGATGCAGTACCTGAGGGAGGGACACCAAGTTTGTGTGGAGTGCCAGCCTCCAGCCCTCGCTGCCGGGCAGACACACTGCTCTGGAGATggagataaggaggaggaggagagTGGCAGGCAGTCTCTGCAGTGGCAGGCGGTGGGTAACCCCAGGTGTCGTGGCGTGTGGAGGCGTGTCAGGAGACTAGAATCCTGTTCCTGTCCCACCATCCACAGCTTCCTCTTCATATAACCCTGGGTTACTGTCTAGTCTATAGACCTGAGTCTACAACTTCTTCATGACCATACAGACAGACCGGACAGCACATGGATCAGGCATAATCAAAAGACAACACCGACAGGGCTGCGTGCATCCGTATGGACCTGATCATACCAGTGTCTAACATAACAATTGATATGAAACCTCTGGCAACAATTTAATCGTGTTTATGCGGCTGATTCGGGTCATTTTGTTCTTTGGTTGGCCAGAATATTTCTTCTGAAAAAATACTATTGTAGATTATTTTCTAAGTGTATGTAACTGTCAGTCCAGTTTTTCTTTGTATTAGCGAAAGCCTTCAATAATGCCTGTAACACATGTCAATAACCAAACCTTCAATAATGCCTGTAACACATGTCAATAACCAAAACTCAACCCATTCATTAATTAGACTTTTATTGAATTTTCAGTCATCCAAGGGGAATGTTGCCTTTTTAAAAGAAATAGAAAGATCTTGGGACATTGAGACACTTTTTACAGGACAGTTAAACTGGCGTTGTGCATGTTTCACACCCAGTCACGGCTCCAAAGTTACGACATGCATCGATTGAACAACAGAACATTTATACAGCAACAACTTACAGCATTAGAAAGTCGACAGgtaaaaatattacaaaacaaaCAGTAGCCTGGAGACCTACAAAAACAACAGTAGAAGAAGAGGTGGGGATAGTCTGAAAGTCTGTCAaatcttttttttccccccttcagTTCCCTGGAATTTCTGTATGTTACAATGACTGGTTGGGAATGACTCATTGGGATCTCTTTCAAATCTATTCAATTTCCAAATCCAATTCTCGAATTGAATTCCAATTTACCAAGCATTTCAAATGGACCCTAACCCTGAAATCCCAACATCAATTTCAATGGCATTTGTCTACTTCCTAAATTGTATGTTATTCATATCTTATCAAAATATGATAAATAAAAGGAGTCACTTGATTGTGCTTTCTCATTAAAACA

Function

NR:

description
somatomedin-B and thrombospondin type-1 domain-containing protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568797.2 True 2052 mRNA 0.46 5 53686160 53696488

Neighbor

gene id symbol gene type direction distance location
LOC110494086 LOC106565337 coding upstream 7995 53670309 ~ 53678165 (+)
pb1 pb1 coding upstream 60949 53620749 ~ 53625211 (+)
LOC110494083 LOC106565334 coding upstream 143206 53531256 ~ 53542954 (+)
LOC110494082 fam3d coding upstream 155973 53526217 ~ 53530187 (+)
cfap20dc cssa12h3orf67 coding upstream 163574 53468135 ~ 53522586 (+)
LOC110493210 LOC106565341 coding downstream 97530 53794018 ~ 53861136 (+)
LOC110494090 LOC106565498 coding downstream 273009 53969497 ~ 53977112 (+)
LOC110493211 LOC106565499 coding downstream 332536 54029024 ~ 54043837 (+)
LOC110494093 LOC106565344 coding downstream 356495 54052983 ~ 54090080 (+)
LOC110494094 LOC106565344 coding downstream 427937 54124425 ~ 54165315 (+)
G1462930 NA non-coding upstream 140440 53543251 ~ 53545720 (+)
G1462923 NA non-coding upstream 155474 53530435 ~ 53530686 (+)
G1462765 NA non-coding upstream 368508 53281814 ~ 53317652 (+)
G1462527 NA non-coding upstream 719597 52960304 ~ 52966563 (+)
G1462526 NA non-coding upstream 728449 52957017 ~ 52957711 (+)
G1463860 NA non-coding downstream 173543 53870031 ~ 53870400 (+)
G1463864 NA non-coding downstream 176418 53872906 ~ 53873220 (+)
G1463865 NA non-coding downstream 176933 53873421 ~ 53873736 (+)
G1463871 NA non-coding downstream 182148 53878636 ~ 53878908 (+)
G1463872 NA non-coding downstream 182676 53879164 ~ 53879363 (+)
G1460249 LOC106565103 other upstream 2595271 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 2788716 50894903 ~ 50897444 (+)
G1459769 NA other upstream 2909088 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 3250454 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 3502464 50181045 ~ 50192699 (+)
G1464092 LOC106565344 other downstream 477526 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 559893 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 775217 54471705 ~ 54474472 (+)
G1466124 NA other downstream 2300160 55996648 ~ 55998347 (+)
G1466131 NA other downstream 2319089 56015577 ~ 56016613 (+)

Expression


Co-expression Network