LOC110494090 (LOC106565498)


Basic Information

Item Value
gene id LOC110494090
gene name LOC106565498
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 53969497 ~ 53977112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568799.2
ATGCACGCTGCACAGACACCTAGGGATGCGAACGTGGGCCTATCTCTCATAGACTACGCCTAATTGGGACACCTCCTTACTATTGGAATTAACCGTCGAAACACGTAAACGGAAAACAAACTTGTTAAACTTTGGAAAAACGGGAAATGATAAATAAATGAACAAGGAACAGATGAGTATCCAGTAAGTCTCTCACCTCACTGATCTCTGGTGCTGGAAGCAGTGTTTTTGCGCTCAGGGTGAAACGCTTTAGTGGCCAGTTAACGAATGAATGATGGAGGACCAGCGAGACCAAGACGTGTGGGCGATGATGAACGATTCATGGACCAACTCGAGTCGCGGTGGAAACGAGACGGGTACCAGGAACCAGACCGGCGTGAACCCCCTGAAGCGGAACGAGGAGGTGGCCAAAGTGGAGGTGACCGTTCTTGTCCTCGTCCTGCTGCTCGCGTTGGCCGGTAACCTTTGCGTCCTCTTGGCTATACATACGAGCAAGCACAGCCACTCTCGAATGTACTACTTCATGAAACACCTCAGTATTGCGGACCTGGTGGTGGCAATCTTCCAGGTCCTCCCGCAGCTCATATGGGACATTACATTTCGCTTTTACGGGTCTGATTTACTGTGCAGGCTGGTGAAGTACCTACAGGTTGTCGGGATGTTCGCGTCCACCTACATGCTTGTTCTAATGTCCATAGACAGATGCTTGGCGATATGTCAGCCCCTCCGCTCTCTGCACAAGAGGAAGGACTGTTTTTATGTGATTGCTTCTTGGATGCTTAGTCTGGTTTTCAGTACCCCTCAAGTGTACATATTTTCCTTGAGGGAGGTGGGCAACGGAGTTTATGACTGTTGGGGAGACTTCGTAGAACCCTGGGGCGCCAAGGCGTACATTACATGGATTAGTCTTACAATCTACATCATTCCAGTGGCTATTTTAAGTATTTGCTATGGCCTGATAAGTTTTAAAATATGGCAAAACTTTAAAATGAAAACCAGACGGGATCAGTGTATGTCTCTGACACCGCGGACGTCCAAAGGTGCAGCGCTCTCTCGGGTGAGCAGCGTGAGGCTCATATCAAAAGCGAAGATCCGAACTGTCAAAATGACTTTTGTCATTGTCGTAGCTTATATTGTTTGTTGGACTCCTTTTTTCTTCGTACAAATGTGGTCGGCATGGGACCCTGCTGCACCCAGAGAAGACATGGCGTTCATCATTGCCATGCTGCTGGCCAGTCTGAACAGCTGCTGTAACCCGTGGATCTATATGTTCTTCGCTGGCCACCTGTTCCATGACCTGATGAGGTGCTTCATCTGCTGCTCCTCACAGTACCTGAAGGCCTCACAGTGCGGAGGGTGTGACCGCCAGCAGAGCCGCAGGagcatctccacctccacctccactttCGTCATCAAGAACCATAGTAGTCAGAGGAGCATCACTCAGACCACCAGCACATGAGGAGTGAGGACCATGGAGGAGATGAGTTGGGGTGGGACAGGAACTCACTACTACTGAAAGCCCTTCTTCATATCAGTCAAAGAGTGGGTTGCATGGTGAAGACTTAGATCTTCACCATGCAATGCTTATCGATGGGGTGGGCCAGATACCAGCAAGAGGTGCAGCACACAGATCTCCAGCACATAAGACCATGAAGAGAGGTTAAGTTGCGTACTCTAAACCTGAAAGACCTTCATCCGAGGCTTGGTGTGGGCCAAGTACCCCTGTAAGACCAGGGCCTCATTTCCCAGAACCTTTGTAGCGTTAAGATCATCGTTAGAATGATCTTACGATGTATCTTTAGTAGccaagctgtttcccaaaaccatcattaCTAAAATTGCACTTGAAAACCCTCATTAGTTTCCGAatgcctcagaccactcgtagaacagctaagtgcATCGTTAGTGTGCATTGCCCTTTTATTCACAGAATATCTTAGCCTAAACATCTTGATTCTATGTTCAGCCCTCTGTCTGACTGTGACCGCCGATAACTTCTGAACGAAGTTCAATACAGATATAAAGTGGCCCAAGTATTTGCCATTGTTATAAGTGGAGGATAAAACAATGCTTCAAATTAAAACTGAGATGACTTCATTGAAAGATAAATAGGCTACATGGGCCtattcagtgccttcagaaaatgatcacaccccttgactttttccacattttgttgtgctacagccagATTTGAAATatcccataatatcaaagtggaa

Function

NR:

description
isotocin receptor-like

GO: NA

KEGG:

id description
K04229 OXTR; oxytocin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568799.2 True 2228 mRNA 0.47 3 53969497 53977112

Neighbor

gene id symbol gene type direction distance location
LOC110493210 LOC106565341 coding upstream 108361 53794018 ~ 53861136 (+)
si:dkey-7k24.5 LOC106565339 coding upstream 273009 53686160 ~ 53696488 (+)
LOC110494086 LOC106565337 coding upstream 291332 53670309 ~ 53678165 (+)
pb1 pb1 coding upstream 344286 53620749 ~ 53625211 (+)
LOC110494083 LOC106565334 coding upstream 426543 53531256 ~ 53542954 (+)
LOC110493211 LOC106565499 coding downstream 51912 54029024 ~ 54043837 (+)
LOC110494093 LOC106565344 coding downstream 75871 54052983 ~ 54090080 (+)
LOC110494094 LOC106565344 coding downstream 147313 54124425 ~ 54165315 (+)
LOC110494095 LOC106565345 coding downstream 196009 54173121 ~ 54198904 (+)
LOC110494100 LOC106565348 coding downstream 279215 54256327 ~ 54264616 (+)
G1463968 NA non-coding upstream 607 53967576 ~ 53968890 (+)
G1463949 NA non-coding upstream 27967 53941328 ~ 53941530 (+)
G1463899 NA non-coding upstream 72231 53896990 ~ 53897266 (+)
G1463887 NA non-coding upstream 78658 53890285 ~ 53890839 (+)
G1463872 NA non-coding upstream 90134 53879164 ~ 53879363 (+)
G1464065 NA non-coding downstream 40043 54017155 ~ 54017811 (+)
G1464092 LOC106565344 non-coding downstream 169927 54147039 ~ 54189617 (+)
G1464091 NA non-coding downstream 187372 54164484 ~ 54198868 (+)
G1464093 NA non-coding downstream 189119 54166231 ~ 54203457 (+)
G1464156 NA non-coding downstream 203967 54181079 ~ 54181512 (+)
G1460249 LOC106565103 other upstream 2878608 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 3072053 50894903 ~ 50897444 (+)
G1459769 NA other upstream 3192425 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 3533791 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 3785801 50181045 ~ 50192699 (+)
LOC110494110 LOC106565356 other downstream 494593 54471705 ~ 54474472 (+)
G1466124 NA other downstream 2019536 55996648 ~ 55998347 (+)
G1466131 NA other downstream 2038465 56015577 ~ 56016613 (+)

Expression


Co-expression Network