LOC110494083 (LOC106565334)


Basic Information

Item Value
gene id LOC110494083
gene name LOC106565334
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 53531256 ~ 53542954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950124.1
CTCCTAAAGAGGCAGACCTCTATGTTTCTCTCATTTGTTGACGGGCTTGGTGTGATGAACGGCTGGTGAATTCCCTAGATTTAATGCGCCCTCTCTGAGACTGGTGTCACGCATTAGATGACGGTAGGGTTGTCAACTTGTCCTTGGTCCTGGGGGAGTCCATTCCgccccgctctcctctccttcactagAGACCAGCTCGAGTGAAACTTCAGAACAAGTGAAACTTCAGGAGCTGTACAGACTCACCTACTCTTGCCGAGGATCTCAGCTCATCCTGAGGCCATGGGAGTCACCCACGGAAAGAAAAGTGAACACCACCTCCAAATCTCTCCCACAAGAAGTAGAACACCTCTGAAGGGAACAGCCTCAGCCCACACTGGCCTGCTGTCGGAACAGGATGGAGAGCAGGGTCAACGTGCAGAGGACCAAGAGCAGGGGAAGTCGGGTGGATCACCACCTCAGCCAGAGAgtcaggaggaggagggcagagacCTTATCATCCAGCCCAAGAAGCGCCTCAACCTGGTCAGAGTCTCCAAGAGCCACCAGGAGCTCCACAGGGAGTTAAGGATGACACACAAGAGAGGTCCCTGTCTGGAGGTGAAGCCGGAGCTCCAGCGTGTTCTGGAACAGAGGAACTGGGAACAGGGgatgaaacagaggagagaggcagagcaggagaAGAAGAACAGGTCTCCTCTCCAACAGGAACTGCTCAAGAGGCACCAGAGGCTGGAGGAGTGTCCATCTGTTCCCTGCAGCTGGAGAGGGAGCTAAAGGCACAGCAGGAGGGCCTGCAGAGTTCCCCAGAGTTCATCAGAGTTAAAGAGAGCCTGAGACGCACCACCATACTGGATCTGGGAGAGAAGGTAGTTTAAAAAGACTGACAGGAAGATGCGTAACGTATGGTTAGAGTGGCGTTGGGGTTGTTTTAGCATCTACATGAGGTAAGGATAGGATGGTGTGGATAAATGATTACATGGAGGTGATGGAAGACTGACATTGAGCTATTCGATTGGGTTGACAGTTGGTGGGATAGTGTGCTTGGCATAGTTCAGCCAGATAGTTCAGGACAACAGTGATCCATTAGTAGCTTagacccagatctgtttgtgctgtcttgccaactcctacggTTATTGAAATGGAAAAACATCATAGGAGTTGGCTGTACAGTACAAGCAGATCTAGGACCAAGTTAGGGCATTAGCTATTAGCTAGCTGCATGGGAGTACAGATGGATGCACACATGGTGCAGATTGGTACCTGAACATGTCATCGGCCACACGTCTTCTCCGGAAGAGCCTACTGCATGAAGGTAGGACCCCTTGTCCAATTGGCCTTTTGAAGAACATCTTTATTTGTTCCAATTAGGGATCGACTCcctgctagcctggtcccaggtctgtttgttgtcttgccaactccaATATTATCTTCCATGGCAACGACCATAGGATCTGGCTATACAGCACAAAGAGATCTGGGACATGGCTGGCCCCTCCCATCCTCTGAGAGACTTGACGTTAGATTAGTAATTTGTCTCTCATGCCAaccactgacacagagagagggagagcacccCTTTAACCAGGGATCTTACTGAGTTACATACAATGAGTGAACGTAACGTTTTTAATTTCATGCCTATAAAGTGTTCACATTGTGATTGTATTCGTGGAATATGTTGATATACTGTATCAGTAGATGTATTTCTAAAATAATATTACATTTCCTATTTGTTTGTTAATAAGTTTACAGTATTTTTTTACCTGTCGTAAATGTTCAgagtcattttatattattaGCAGTTTTGCAACTGGTCTAAGACCAGTTGTTATTTCTTAAATAATGGTTCCGTCCTGTCCTTCCCTGATCCTCTCACGTACACATTCTCTATGCAAATCAACAGAACATACATCATTCACCTAGTGACAACAGTGAATAATAATGTTTAACACTTCGGATGACAGTGTCCTTGGAAATGTGTACTTTGTCATAAATAAAAGGACATTAAACATGAATAAAGTGCAT
>XM_021568792.2
ACCTCTATGTTTCTCTCATTTGTTGACGGGCTTGGTGTGATGAACGGCTGGTGAATTCCCTAGATTTAATGCGCCCTCTCTGAGACTGGTGTCACGCATTAGATGACGGTAGGGTTGTCAACTTGTCCTTGGTCCTGGGGGAGTCCATTCCgccccgctctcctctccttcactagAGACCAGCTCGAGTGAAACTTCAGAACAAGTGAAACTTCAGGAGCTGTACAGACTCACCTACTCTTGCCGAGGATCTCAGCTCATCCTGAGGCCATGGGAGTCACCCACGGAAAGAAAAGTGAACACCACCTCCAAATCTCTCCCACAAGAAGTAGAACACCTCTGAAGGGAACAGCCTCAGCCCACACTGGCCTGCTGTCGGAACAGGATGGAGAGCAGGGTCAACGTGCAGAGGACCAAGAGCAGGGGAAGTCGGGTGGATCACCACCTCAGCCAGAGAgtcaggaggaggagggcagagacCTTATCATCCAGCCCAAGAAGCGCCTCAACCTGGTCAGAGTCTCCAAGAGCCACCAGGAGCTCCACAGGGAGTTAAGGATGACACACAAGAGAGGTCCCTGTCTGGAGGTGAAGCCGGAGCTCCAGCGTGTTCTGGAACAGAGGAACTGGGAACAGGGgatgaaacagaggagagaggcagagcaggagaAGAAGAACAGGTCTCCTCTCCAACAGGAACTGCTCAAGAGGCACCAGAGGCTGGAGGAGCTGGAGAGGGAGCTAAAGGCACAGCAGGAGGGCCTGCAGAGTTCCCCAGAGTTCATCAGAGTTAAAGAGAGCCTGAGACGCACCACCATACTGGATCTGGGAGAGAAGGTAGTTTAAAAAGACTGACAGGAAGATGCGTAACGTATGGTTAGAGTGGCGTTGGGGTTGTTTTAGCATCTACATGAGGTAAGGATAGGATGGTGTGGATAAATGATTACATGGAGGTGATGGAAGACTGACATTGAGCTATTCGATTGGGTTGACAGTTGGTGGGATAGTGTGCTTGGCATAGTTCAGCCAGATAGTTCAGGACAACAGTGATCCATTAGTAGCTTagacccagatctgtttgtgctgtcttgccaactcctacggTTATTGAAATGGAAAAACATCATAGGAGTTGGCTGTACAGTACAAGCAGATCTAGGACCAAGTTAGGGCATTAGCTATTAGCTAGCTGCATGGGAGTACAGATGGATGCACACATGGTGCAGATTGGTACCTGAACATGTCATCGGCCACACGTCTTCTCCGGAAGAGCCTACTGCATGAAGGTAGGACCCCTTGTCCAATTGGCCTTTTGAAGAACATCTTTATTTGTTCCAATTAGGGATCGACTCcctgctagcctggtcccaggtctgtttgttgtcttgccaactccaATATTATCTTCCATGGCAACGACCATAGGATCTGGCTATACAGCACAAAGAGATCTGGGACATGGCTGGCCCCTCCCATCCTCTGAGAGACTTGACGTTAGATTAGTAATTTGTCTCTCATGCCAaccactgacacagagagagggagagcacccCTTTAACCAGGGATCTTACTGAGTTACATACAATGAGTGAACGTAACGTTTTTAATTTCATGCCTATAAAGTGTTCACATTGTGATTGTATTCGTGGAATATGTTGATATACTGTATCAGTAGATGTATTTCTAAAATAATATTACATTTCCTATTTGTTTGTTAATAAGTTTACAGTATTTTTTTACCTGTCGTAAATGTTCAgagtcattttatattattaGCAGTTTTGCAACTGGTCTAAGACCAGTTGTTATTTCTTAAATAATGGTTCCGTCCTGTCCTTCCCTGATCCTCTCACGTACACATTCTCTATGCAAATCAACAGAACATACATCATTCACCTAGTGACAACAGTGAATAATAATGTTTAACACTTCGGATGACAGTGTCCTTGGAAATGTGTACTTTGTCATAAATAAAAGGACATTAAACATGAATAAAGTGCA
>XM_036950123.1
atgatgtatggagagagagggggcagtagcgaggctacaggACAACCTGAGCAGTCATGTGACTGACTGGCGGCTAGAGGTGTGGCCAGGGCTGGAGGTGGGGCTGAGGTGGAATGGAGACAGAGGTGTTAGGGTAGTGGAGCAGGGAGTGGCTATGGAGGTAGGCTCTCAGACCAGCCCAGCTCTGGCCAGACCTCTGGATTCATAGTGCCAGTGATAGCTTTGCTAGCTTACTTATCACTAGCCGGGCTCTGGGCTCCATAGAAGAGATGGAAACTAGCAGTGTCATCCCAAACAGAAcaccagggaggcagagagagggactggtcaAGTCAGCCTCAGCCCACACTGGCCTGCTGTCGGAACAGGATGGAGAGCAGGGTCAACGTGCAGAGGACCAAGAGCAGGGGAAGTCGGGTGGATCACCACCTCAGCCAGAGAgtcaggaggaggagggcagagacCTTATCATCCAGCCCAAGAAGCGCCTCAACCTGGTCAGAGTCTCCAAGAGCCACCAGGAGCTCCACAGGGAGTTAAGGATGACACACAAGAGAGGTCCCTGTCTGGAGGTGAAGCCGGAGCTCCAGCGTGTTCTGGAACAGAGGAACTGGGAACAGGGgatgaaacagaggagagaggcagagcaggagaAGAAGAACAGGTCTCCTCTCCAACAGGAACTGCTCAAGAGGCACCAGAGGCTGGAGGAGCTGGAGAGGGAGCTAAAGGCACAGCAGGAGGGCCTGCAGAGTTCCCCAGAGTTCATCAGAGTTAAAGAGAGCCTGAGACGCACCACCATACTGGATCTGGGAGAGAAGGTAGTTTAAAAAGACTGACAGGAAGATGCGTAACGTATGGTTAGAGTGGCGTTGGGGTTGTTTTAGCATCTACATGAGGTAAGGATAGGATGGTGTGGATAAATGATTACATGGAGGTGATGGAAGACTGACATTGAGCTATTCGATTGGGTTGACAGTTGGTGGGATAGTGTGCTTGGCATAGTTCAGCCAGATAGTTCAGGACAACAGTGATCCATTAGTAGCTTagacccagatctgtttgtgctgtcttgccaactcctacggTTATTGAAATGGAAAAACATCATAGGAGTTGGCTGTACAGTACAAGCAGATCTAGGACCAAGTTAGGGCATTAGCTATTAGCTAGCTGCATGGGAGTACAGATGGATGCACACATGGTGCAGATTGGTACCTGAACATGTCATCGGCCACACGTCTTCTCCGGAAGAGCCTACTGCATGAAGGTAGGACCCCTTGTCCAATTGGCCTTTTGAAGAACATCTTTATTTGTTCCAATTAGGGATCGACTCcctgctagcctggtcccaggtctgtttgttgtcttgccaactccaATATTATCTTCCATGGCAACGACCATAGGATCTGGCTATACAGCACAAAGAGATCTGGGACATGGCTGGCCCCTCCCATCCTCTGAGAGACTTGACGTTAGATTAGTAATTTGTCTCTCATGCCAaccactgacacagagagagggagagcacccCTTTAACCAGGGATCTTACTGAGTTACATACAATGAGTGAACGTAACGTTTTTAATTTCATGCCTATAAAGTGTTCACATTGTGATTGTATTCGTGGAATATGTTGATATACTGTATCAGTAGATGTATTTCTAAAATAATATTACATTTCCTATTTGTTTGTTAATAAGTTTACAGTATTTTTTTACCTGTCGTAAATGTTCAgagtcattttatattattaGCAGTTTTGCAACTGGTCTAAGACCAGTTGTTATTTCTTAAATAATGGTTCCGTCCTGTCCTTCCCTGATCCTCTCACGTACACATTCTCTATGCAAATCAACAGAACATACATCATTCACCTAGTGACAACAGTGAATAATAATGTTTAACACTTCGGATGACAGTGTCCTTGGAAATGTGTACTTTGTCATAAATAAAAGGACATTAAACATGAATAAAGTGCA

Function

NR:

description
PREDICTED: protein FAM107B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950124.1 False 2037 mRNA 0.47 5 53531256 53542954
XM_021568792.2 False 2001 mRNA 0.47 5 53531271 53542953
XM_036950123.1 True 1985 mRNA 0.48 4 53539754 53542953

Neighbor

gene id symbol gene type direction distance location
LOC110494082 fam3d coding upstream 1069 53526217 ~ 53530187 (+)
cfap20dc cssa12h3orf67 coding upstream 8670 53468135 ~ 53522586 (+)
LOC110494076 NA coding upstream 556404 52810158 ~ 52974852 (+)
LOC110494075 LOC106565328 coding upstream 779074 52731398 ~ 52752182 (+)
LOC110494073 LOC106583524 coding upstream 831624 52639622 ~ 52699632 (+)
pb1 pb1 coding downstream 77795 53620749 ~ 53625211 (+)
LOC110494086 LOC106565337 coding downstream 127355 53670309 ~ 53678165 (+)
si:dkey-7k24.5 LOC106565339 coding downstream 143206 53686160 ~ 53696488 (+)
LOC110493210 LOC106565341 coding downstream 251064 53794018 ~ 53861136 (+)
LOC110494090 LOC106565498 coding downstream 426543 53969497 ~ 53977112 (+)
G1462923 NA non-coding upstream 570 53530435 ~ 53530686 (+)
G1462765 NA non-coding upstream 213604 53281814 ~ 53317652 (+)
G1462527 NA non-coding upstream 564693 52960304 ~ 52966563 (+)
G1462526 NA non-coding upstream 573545 52957017 ~ 52957711 (+)
G1462399 NA non-coding upstream 750626 52780408 ~ 52780630 (+)
G1462930 NA non-coding downstream 297 53543251 ~ 53545720 (+)
G1463860 NA non-coding downstream 327077 53870031 ~ 53870400 (+)
G1463864 NA non-coding downstream 329952 53872906 ~ 53873220 (+)
G1463865 NA non-coding downstream 330467 53873421 ~ 53873736 (+)
G1463871 NA non-coding downstream 335682 53878636 ~ 53878908 (+)
G1460249 LOC106565103 other upstream 2440367 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 2633812 50894903 ~ 50897444 (+)
G1459769 NA other upstream 2754184 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 3095550 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 3347560 50181045 ~ 50192699 (+)
G1464092 LOC106565344 other downstream 631060 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 713427 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 928751 54471705 ~ 54474472 (+)
G1466124 NA other downstream 2453694 55996648 ~ 55998347 (+)
G1466131 NA other downstream 2472623 56015577 ~ 56016613 (+)

Expression


Co-expression Network