RNA id: XM_021568792.2


Basic Information

Item Value
RNA id XM_021568792.2
length 2001
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110494083
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 53531256 ~ 53542954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTCTATGTTTCTCTCATTTGTTGACGGGCTTGGTGTGATGAACGGCTGGTGAATTCCCTAGATTTAATGCGCCCTCTCTGAGACTGGTGTCACGCATTAGATGACGGTAGGGTTGTCAACTTGTCCTTGGTCCTGGGGGAGTCCATTCCgccccgctctcctctccttcactagAGACCAGCTCGAGTGAAACTTCAGAACAAGTGAAACTTCAGGAGCTGTACAGACTCACCTACTCTTGCCGAGGATCTCAGCTCATCCTGAGGCCATGGGAGTCACCCACGGAAAGAAAAGTGAACACCACCTCCAAATCTCTCCCACAAGAAGTAGAACACCTCTGAAGGGAACAGCCTCAGCCCACACTGGCCTGCTGTCGGAACAGGATGGAGAGCAGGGTCAACGTGCAGAGGACCAAGAGCAGGGGAAGTCGGGTGGATCACCACCTCAGCCAGAGAgtcaggaggaggagggcagagacCTTATCATCCAGCCCAAGAAGCGCCTCAACCTGGTCAGAGTCTCCAAGAGCCACCAGGAGCTCCACAGGGAGTTAAGGATGACACACAAGAGAGGTCCCTGTCTGGAGGTGAAGCCGGAGCTCCAGCGTGTTCTGGAACAGAGGAACTGGGAACAGGGgatgaaacagaggagagaggcagagcaggagaAGAAGAACAGGTCTCCTCTCCAACAGGAACTGCTCAAGAGGCACCAGAGGCTGGAGGAGCTGGAGAGGGAGCTAAAGGCACAGCAGGAGGGCCTGCAGAGTTCCCCAGAGTTCATCAGAGTTAAAGAGAGCCTGAGACGCACCACCATACTGGATCTGGGAGAGAAGGTAGTTTAAAAAGACTGACAGGAAGATGCGTAACGTATGGTTAGAGTGGCGTTGGGGTTGTTTTAGCATCTACATGAGGTAAGGATAGGATGGTGTGGATAAATGATTACATGGAGGTGATGGAAGACTGACATTGAGCTATTCGATTGGGTTGACAGTTGGTGGGATAGTGTGCTTGGCATAGTTCAGCCAGATAGTTCAGGACAACAGTGATCCATTAGTAGCTTagacccagatctgtttgtgctgtcttgccaactcctacggTTATTGAAATGGAAAAACATCATAGGAGTTGGCTGTACAGTACAAGCAGATCTAGGACCAAGTTAGGGCATTAGCTATTAGCTAGCTGCATGGGAGTACAGATGGATGCACACATGGTGCAGATTGGTACCTGAACATGTCATCGGCCACACGTCTTCTCCGGAAGAGCCTACTGCATGAAGGTAGGACCCCTTGTCCAATTGGCCTTTTGAAGAACATCTTTATTTGTTCCAATTAGGGATCGACTCcctgctagcctggtcccaggtctgtttgttgtcttgccaactccaATATTATCTTCCATGGCAACGACCATAGGATCTGGCTATACAGCACAAAGAGATCTGGGACATGGCTGGCCCCTCCCATCCTCTGAGAGACTTGACGTTAGATTAGTAATTTGTCTCTCATGCCAaccactgacacagagagagggagagcacccCTTTAACCAGGGATCTTACTGAGTTACATACAATGAGTGAACGTAACGTTTTTAATTTCATGCCTATAAAGTGTTCACATTGTGATTGTATTCGTGGAATATGTTGATATACTGTATCAGTAGATGTATTTCTAAAATAATATTACATTTCCTATTTGTTTGTTAATAAGTTTACAGTATTTTTTTACCTGTCGTAAATGTTCAgagtcattttatattattaGCAGTTTTGCAACTGGTCTAAGACCAGTTGTTATTTCTTAAATAATGGTTCCGTCCTGTCCTTCCCTGATCCTCTCACGTACACATTCTCTATGCAAATCAACAGAACATACATCATTCACCTAGTGACAACAGTGAATAATAATGTTTAACACTTCGGATGACAGTGTCCTTGGAAATGTGTACTTTGTCATAAATAAAAGGACATTAAACATGAATAAAGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1673498 lncRNA upstream 585 53530435 ~ 53530686 (+) True G1462923
TU1673332 lncRNA upstream 213619 53281814 ~ 53317652 (+) True G1462765
TU1673086 lncRNA upstream 564708 52960304 ~ 52966563 (+) True G1462527
TU1673085 lncRNA upstream 573560 52957017 ~ 52957711 (+) True G1462526
TU1672949 lncRNA upstream 750641 52780408 ~ 52780630 (+) True G1462399
TU1673509 lncRNA downstream 298 53543251 ~ 53545720 (+) False G1462930
TU1673506 lncRNA downstream 352 53543305 ~ 53545720 (+) False G1462930
TU1673512 lncRNA downstream 352 53543305 ~ 53545720 (+) False G1462930
TU1673514 lncRNA downstream 352 53543305 ~ 53545720 (+) False G1462930
TU1673517 lncRNA downstream 352 53543305 ~ 53545720 (+) False G1462930
XM_021568791.2 mRNA upstream 1084 53526217 ~ 53530187 (+) True LOC110494082
XM_021568790.2 mRNA upstream 8685 53468135 ~ 53522586 (+) True cfap20dc
XM_021568788.2 mRNA upstream 556419 52810418 ~ 52974852 (+) False LOC110494076
NM_001160635.2 mRNA downstream 77796 53620749 ~ 53625211 (+) True pb1
XM_036950125.1 mRNA downstream 127356 53670309 ~ 53678165 (+) False LOC110494086
XM_036950126.1 mRNA downstream 127356 53670309 ~ 53678165 (+) True LOC110494086
XM_021568797.2 mRNA downstream 143207 53686160 ~ 53696488 (+) True si:dkey-7k24.5
XR_005037005.1 mRNA downstream 251065 53794018 ~ 53851699 (+) False LOC110493210
TU1670644 other upstream 2440382 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 2633827 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 2754199 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 3095565 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 3347575 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 631061 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 713428 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 928752 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 928992 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 2453695 55996648 ~ 55998174 (+) False G1466124

Expression Profile