RNA id: TU1673517


Basic Information

Item Value
RNA id TU1673517
length 2333
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G1462930
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 53543251 ~ 53545720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCGATGGTACAAATCATTATCTCCTTTCATACATGTTGATCAATAACCCATGATGCATTGCATCCATACATTAGTAGCTCAAAACAGCTTTTACAAAAAAggatatagaatatataatatacacgtGTTTCTTTATGCATTTAAATGTTTGTCATGAGTCAAATaaatccgttttttttttttacaaatcggAACCAAGGGGAAACAAAACCAAGGAAAAGTTCAACAGAAGGTCTATACCAAACAAATGAACTCAGGTTATTAGGTTAACAAAGTCATCAACAGCAACTACACCAAACATATAACATGAAGCCCTTCACACATGGTTTGCATATTTTCCACTCTGCAGTCAGTCGGTCACTTATAAAGCCAGAATGATTGCCTTCTATGACTGGCCAACATCTTTCGACCAATTATAACCTCATGAAGTCACTGCTAAGGACCAAACACAGGTCACCATTGCCCTAAACCAGGTCCAACTATAAGGTTTTGCCTAGCAGTACCTCTGATTCAACTAAACAATAAGGATTTGGTATCCAATCTGAACAGCCGTTTGGCATGAACAAAACAGATTACAATAGGCTTCCCCAGTTGGCTTTCCATTGTCAGCCTTACTGATGTGTTGAAACCGTAATCATATCAAGTAACACTGTACTTTGAGATTTTTAATCCGACTGCATTCTGTCTTGTCATTGCAGTTAGAGAACTGGTTTCTCATTCCACTCCTAAGCAAACGCTCCAAAgtatttgaaatatttcaaatagtattttaacTGAAGTCTGTCGTGTTCACTCAACATGTTTTATGTTACAATCAAAACTGTTACACAGTACCAGGGCAAGGGAGGGGTCAGGGATCATTCAGTATGTTGAGACAAACTACAAAACCTTAAGTGGACAAAACAAATAAATAGACTCCCACGACGACTTATAGAACATCCTAGAGTTGTAATTTAAACTAAATCAACATGGTTACCAGGGAAATGGTGCCAGTGTGCCACTGGGGTAGAGATATGACCATCATATGGACAATGCAGAGGTTAAGGTAAAGTTACAGTTCAGACTGTGCTGCAACGTACATACGTTGTCAACAACAGAACATCTGACTGGTGATTCTCACTTCACATTATATCGTTTTCAGAATTACATTATTCAGAATTACATTATTCAGAATTACATTATTCAGAATTACTTTATTCAGAATTACATTATTCAGAATTACTTTATTCAGAATTACATTATTCAGAATTACATTATTCAGAATTACTTTATTGATTTTTTTGATCAGGACAACAGAGTAGTAATAATAATCATACAcgtgtgtttttttaaatatttatatgTTGATCATCATTCATGTAAACATATTATAACCAGGTCATGCAGACGGTAGACCGATACTTCTTCCACAAAAGAGAGGTGCACAGTACAGAGCAgacagtgaacacacacactgagatccCTCCCACCACAAAGGATAGGGGTGTAAAATCGGCGGCACGTTTAAATGATCATAACATTTAGGGACCTTTGCGGATAGAGTTGCCAATGCATACAACTGACTCGATTCCTTATCAAGAGTTTATTTGCAAACTACTCCTAACTGAAATGGTCTCAACATCAAACCATGTGCCCCAACTCACATGTTAAGTGGGTGTGGTTACTATGGACATGCTCATTGGCTGAGAGGGTTATAGGATTAATCTGATAGGCTATACAGTCCGTTTGTTGTCATAGGGATCTCAGTGTGAACCTCTGGTAACAGAACTGCCataagattttttttctcccttttatATCCACACATTTCACATTTTATCATCCAACCGAAGCATGCAGATGCCTCGAACCAGAAGCGCTTTTTACGACCCCAGTCTGAACCAGAATACAGAGTCAATCCAGAGTCCTGCAGTCAACTCACTCATAAACTCTGAAGTGTTTCTGATGGGGATGGAAGCATCAAAACTCAAACAAACACAGGTAAGATACGGATGATTTATGATCCAAATGGAACAATcgaagaagaaaaataaacattACAATGGAAAGAAGAAAGTAGTAGTGGTTTGAATGTTGATGATGAACTGGTATTGTGCCTGGAAACTATGCCTGGCTGGTTGTGTCCCTCTAGTGGACACAGCCTGTCATAACATCACTCTGCATTCATGGCCAGACTGGGCCGGCTCTGGGTGGCTCCATAGAAACATACGTATCCCCATGGCGACAGAGGGGCGGGGTCTGTGGCTACTCAGACGCGACTTGCTGGCCTGCAGCAGTAGGTGCAACTCCTCAGACTGTCCCGGTCGGCACTGCCTTCTGCACTCCCGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1673498 lncRNA upstream 12619 53530435 ~ 53530686 (+) True G1462923
TU1673332 lncRNA upstream 225653 53281814 ~ 53317652 (+) True G1462765
TU1673086 lncRNA upstream 576742 52960304 ~ 52966563 (+) True G1462527
TU1673085 lncRNA upstream 585594 52957017 ~ 52957711 (+) True G1462526
TU1672949 lncRNA upstream 762675 52780408 ~ 52780630 (+) True G1462399
TU1674525 lncRNA downstream 324311 53870031 ~ 53870400 (+) True G1463860
TU1674529 lncRNA downstream 327186 53872906 ~ 53873220 (+) True G1463864
TU1674530 lncRNA downstream 327701 53873421 ~ 53873736 (+) True G1463865
TU1674536 lncRNA downstream 332916 53878636 ~ 53878908 (+) True G1463871
TU1674537 lncRNA downstream 333444 53879164 ~ 53879363 (+) True G1463872
XM_036950124.1 mRNA upstream 351 53531256 ~ 53542954 (+) False LOC110494083
XM_021568792.2 mRNA upstream 352 53531271 ~ 53542953 (+) False LOC110494083
XM_036950123.1 mRNA upstream 352 53539754 ~ 53542953 (+) True LOC110494083
XM_021568791.2 mRNA upstream 13118 53526217 ~ 53530187 (+) True LOC110494082
XM_021568790.2 mRNA upstream 20719 53468135 ~ 53522586 (+) True cfap20dc
NM_001160635.2 mRNA downstream 75029 53620749 ~ 53625211 (+) True pb1
XM_036950125.1 mRNA downstream 124589 53670309 ~ 53678165 (+) False LOC110494086
XM_036950126.1 mRNA downstream 124589 53670309 ~ 53678165 (+) True LOC110494086
XM_021568797.2 mRNA downstream 140440 53686160 ~ 53696488 (+) True si:dkey-7k24.5
XR_005037005.1 mRNA downstream 248298 53794018 ~ 53851699 (+) False LOC110493210
TU1670644 other upstream 2452416 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 2645861 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 2766233 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 3107599 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 3359609 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 628294 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 710661 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 925985 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 926225 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 2450928 55996648 ~ 55998174 (+) False G1466124

Expression Profile