RNA id: XM_036950126.1


Basic Information

Item Value
RNA id XM_036950126.1
length 3441
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110494086
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 53670309 ~ 53678165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCTGAACGATGTCATTTCCCGGAAGAGACAGCTAAGATTGGGCCATTCTCTTTAGTGTTTGCCTTGTATGCCTTTCCCCCACCACTTCACTACCAACATTTTGATCCAAAATCACACGGGAAACCCTACACAGTTGGAGCAAAAACAAACCAATACAACACTAAAGTAACGTATCCAATGGAGTAACCAAAAACTGGACAGAAAGATAACGAGGCGGAGCTTTGCAGTCATTTACCTCAATCAAATAAACCTTAAACATCTATCGCTGCAGTACTGAAGATTTCCCACCTCGACTTAACCTACCTACCACCTGACTCCACCAAACCCAACTGGCCAGTATGTCCCAGTTCCAGTGTCCGGGTAACCTTATGTCGAGCCCTGCTGCCAGCCCCTTGCAGCAGCTGTCTCAGCCCCAGCCAGGGTACAGTATCCCCTGTGCCTCGGGCCCCCTGCCCTCCGAGAGCGCCAGTCACCCGCTCCTGAGCTCAGCCCTGCCCTCGGGCTCAGCCACTCCATTCAGCCCCACCTCCACAGTATCTAACATGGCAAACCCTAAAGAGAAGACCCCCATGTGTCTGGTGAATGAGTTAGCCCGTTTCAATAAGATCCAGCCTGAGTATAAGCTGCTCTGTGAGCAAGGACCAGCTCATTCCAAGATCTTCTCAGTGCGGTTATCACTGGGGGATCAGCACTGGGAGGCAGAGGGGACCAGTATAAAGAAGGCCCAGCACTCTGCAGCTGCCACAGCCTTGGCCCAGACAACACTGCCCAAACCTAGCATGAGGAACAACCCCCGCAACAACACAGATTGCATGACACACACGGTGGAGCTGAATGCCTTCTGTATGAAGCTAGGGGTGAAGCCTATGTACAAGCCCATAGACCCCTACCCTGGGATGAGACCATCCAACTTCAACTACAACATCAGGGCCCCGGGGCCTTACCAACGCTCCATGCAACAGTACTACTACCCGTTTCCCCCGGTGGGGCCGGTGTTGTACCACATGGAGCTGAACATCGGGGGCCAGCAGTTCCACGGGAAGGGGCGCACGCGGCAGCTTGCCAAACATGACGCCGCTGCCAAGGCACTGAAGACTCTACAGAAAGAGCCCATACTGCTGCAGCAGCTGCCTGAGACGAATGGAGAAGACACAGAGAACTTCAATAAATCAGAAATCAGCCAGGTGTTTGAGATCGCACTGAAGAGGAACATGCCTGTCAACTTTGAGGTTCTGAAGGAGGCAGGCCCGCCTCACATGAAGAGCTTCATGGTGTGTGTGGCGGTGGGCGAGTTCTGTGGCGAGGGCGAGGGCAAGAGTAAGAAGATCGCTAAAAAGCTGGCAGCTACAGCCGTGCTGGAGGAACTGAGGAGACTGCCCCAGCTGTCCCCCAGCGTGGAGAAGATTCAGCCAGCACGCATTAAGAAGAAAACCAAGTCCATTATTAAGctgcagACCAGTCCAGAGTATGGGCAGGGCATGAACCCCATCAGCAGACTGGCTCAGATCCAGCAGGCTAAGAAAGAGAAGGAGCCAGAGTATAGCATGATGACGGAGAGGGGGCTGCCCAGACGCAGGGAGTTCGTCATGCAGGTGACTGTGTGTGGCCATTGTGCGGAGGGCTTAGGCCCCAGTAAGAAGGTAGCGAAGAGGAACGCAGCAGAGAAGATGCTTGAGCTTCTAGGTTTCAAAGTGCCACCGCCTCAGCCCCACAAACCTGCGCTCAAAACGGACGAAAAGGTCCTGCAGAAGAAAAATGGAGACGGGAGGAAAGTGACCTTCTTCGAGCCGGGCTCTGTAGAAGAGAGCCAGTCGCTGGGCTCCAAGGCAGAGAACTACCGCCAGCCCTACCTCAGCCACCAGCAGCTCCCAGCAGGCATCCTGCCAATGGTGGCAGAGGTGGCCCAGGCTATAGGGGCCAGCCCCAGTCTGGGGCACCAGAACAAGGGTTACGGCCCCCGGACCAACCCTGCcaagGCCACCCTGACGGCCATGATCGCCAACGAGCTGCTGTACGCTGGTACCTCCCTGACTGCCGATACCATCCTGAAGAGTCAGAACAGTATGGCTCATCTAGTACCTCACGGACCCCTGACCAGACCCTCCGAACAGCTCAGCTACCTAGCCAACGTACAAGGTCTACAGGTGGATTACAAAGACTTCCCCAAAAACAACAAGAATGAATTTGTATCGCTGATCAACTGCTCCTCCCAGCCGCCTCTTATCAGCCACGGCATTGGCAAGGACGTGGAGTCCTGTCACGACATGGCGGCCTTGAGTGTCCTGAAATTACTGTCAGAGCTGGAccagcagcagcaccagcagcagaCCAATGACAGGACAGGGAGCGGACCAACCTCTGGGTGTGGCAAACAGGACATGGACGGCTGCGACTCTCTCATCATCAAACAGGCTAACTCAAGCAACTTGGGACAACAGACTCTGGATGGCACTGTGTAGACAGACGCACACCATTGGTTGTTTGCAAGAAGCACTAAAAGAAAACTCTGACACTGTGTTGTGATAGGCTGTTTTAGAATTCTACAGGAAGCTCAGGGCAACTGTAGGCTCTAAAGCATCACTAGTGTTTATATTAAATGTTCTGAAATGTTAACAGTTAAACAAGATTAATAGAAGAAATTGTTTTAATTTAATTTCCTCCTCCTTAATGTTGTTTAATTGTACACATTTATGATTTTGTTTTGTTGCTTAGTAGAAAAATGTAGCTGCATCGTATCCGATATAATGGCAGTCCGCTCTGTTGAGATGGAATGGGATAATGTTAACTGTGAAAAGAAGCTTTGTTTTTGAGTAGAAgcgttttctctctttttttcccctttAATGTTAACaactttctttctctcatttttaaatgttttattgttcTTTAACCCGGGGCCTTGGAATTCCTGGAGGGTTGTTCACAAACATGGCTTCAAAAACATTTCAAATATTTTCAGCGTTTGCTTTAGTCTGACTGGCGTGCCAGATGGACTGGTTTGCAGTTTTGccactattccattggttccattgtgccagtCAAGCTCAATCAATCCCAGCTAAAGTATTTGTAATTATTTCAAATGgcttttgaacccaggtctactgTAGTTGTTACAATAGTGTTTACTTGTGAAGTATGTTACCCCATAGAAGGATAGGATGCAGCTAGCAAACCACTGTTGATTTTCCTAGAGTGCTTTATAACAACAACCACCACAAGTGAACAGTGTTtatttacattaccatgtaggACTGGGAAGGTTTTGAGACTAATTGTAGCGTTCGTGCGTGTGATGTTGTCTATCCCCACTGAAAGATGGTGGGGCAGTATAAGTCTGtgttgatccccccccccctccctcggtGTCAAACCACCTCTCTGCTCCCCATGGAATGTAAGTAAAACTTGTGTGCTGTAAAGCACAAAACCACCA

Function

GO: NA

KEGG:

id description
K17597 STAU; double-stranded RNA-binding protein Staufen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1673506 lncRNA upstream 124589 53543305 ~ 53545720 (+) False G1462930
TU1674525 lncRNA downstream 191866 53870031 ~ 53870400 (+) True G1463860
TU1674529 lncRNA downstream 194741 53872906 ~ 53873220 (+) True G1463864
TU1674530 lncRNA downstream 195256 53873421 ~ 53873736 (+) True G1463865
TU1674536 lncRNA downstream 200471 53878636 ~ 53878908 (+) True G1463871
TU1674537 lncRNA downstream 200999 53879164 ~ 53879363 (+) True G1463872
NM_001160635.2 mRNA upstream 45098 53620749 ~ 53625211 (+) True pb1
XM_036950124.1 mRNA upstream 127355 53531256 ~ 53542954 (+) False LOC110494083
XM_021568792.2 mRNA upstream 127356 53531271 ~ 53542953 (+) False LOC110494083
XM_036950123.1 mRNA upstream 127356 53539754 ~ 53542953 (+) True LOC110494083
XM_021568791.2 mRNA upstream 140122 53526217 ~ 53530187 (+) True LOC110494082
XM_021568797.2 mRNA downstream 7995 53686160 ~ 53696488 (+) True si:dkey-7k24.5
XR_005037005.1 mRNA downstream 115853 53794018 ~ 53851699 (+) False LOC110493210
XM_036950127.1 mRNA downstream 115853 53794018 ~ 53861136 (+) False LOC110493210
XM_036950128.1 mRNA downstream 115853 53794018 ~ 53861136 (+) False LOC110493210
XM_036950129.1 mRNA downstream 115853 53794018 ~ 53861136 (+) False LOC110493210
TU1670644 other upstream 2579420 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 2772865 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 2893237 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 3234603 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 3486613 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 495849 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 578216 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 793540 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 793780 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 2318483 55996648 ~ 55998174 (+) False G1466124

Expression Profile