RNA id: XM_036950128.1


Basic Information

Item Value
RNA id XM_036950128.1
length 4123
RNA type mRNA
GC content 0.53
exon number 21
gene id LOC110493210
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 53794018 ~ 53861136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACTTTTGCATCCAACTCTTGCTGCAGCAGAGACCTCGCAAGAAAAAGGGTGGCTGGAAAGGCGTATGGAAAATTGCACGATGCGATTCTTGCTCATGCACCCCACTGCAAGGCAGTGTTTATATTGAAACATATAATTTACCAAATGTAGTATATACGGATTCTTGATATTGTGTTGTTGTTGGGACATTCAAAAATGTTATGTTGAGGAAAGAGGGGAGTTGTCCAGATCTGTTTGGCACTTTTAACCAGTTCAACGTCGCCTTGATCGCTGTGCAACCTCAAGTGCATTTTGAGACCCTGGAAATCTCTGAAACGCATGTAGCCCTCCCTGCTTCACGCATTTGACGGTTTTTGCCGAAGAGATTTGTAGGCTAGGATACTTTGGTGTCGCGAGGCGAGGTGTATAGGTTTCCGTCATCTATTCCTAAAGAATCATGTCATCTCATACGAGAGTCAAGAAGGACAAGGAGATTATTGGGGATTACGAGACTCAAGTGAAAGAGATCCGTAACCAGTTGGTGGAGCAGTTCCGATGTCTTGAGCAGCAGTCGGAGTCCCGGCTACAGCTTCTGCAGGACCTACAGGAATTCTTCCGCCGCAAGGCCGAGCTGCAGTTGGAGTACTCCAGAGGCCTGGACAAACTGGCCGAGCGCTTCTCCGGCAAGATACGCTCCTCCAGGGAACATCAGCACTTTAAGAAGGACCAGAACCTGCTGTCGACAGTGAACTGTTGGTACTTGGTTCTGAaccagacaaggagagagagcagagatcaTGCTACCCTCAGTGACCTCTACAACAACAACGTCATCTTCCGCCTGGCACACGTCGGAGAGGATGTCATCAGACTTTTCAAAAAGAGCAAAGACATCGGGGTGCAGATGCACGAGGAGTTGGTAAAAGTCACGAATGAGCTCTACACTGTGATGAAGACCTACCACATGTACCACGCCGAGAGCGTCAGCGCCGAGAGCAAGCTGAAGGAGGcggagaaacaggaagagaagcAGATTGGCAAGGCCAATGAGGTCAGCACCAGCCTCATGCGCCACGACGACCGCCCACAGCGACGCAGCTCCGTCAAGAAGATGGAGAAGATGAAGGAGAAGagacAAGCCAAATACTCTGAAAACAAGCTGAAGTGCACTAAAGCCCGGAACGACTATTTGTTGAACCTGGCCGCGACCAATGCTCTGGTGGCCAAATATTACATCCACGATGTCTCTGACATGATAGATTGCTGTGACATGGGCTACCATGCCAGCCTGGCGCGGACCCTGAGGACCTACCTGTCTGCAGAGTACAGCCTGGAGACATCCCGCCACGAGGGGCTGGACCAGCTGGAGGGGGCCGTGGATGCCATGGATGTCAGAGGGGACAAACACAGGGTCATGGACATGCACAGTCAGATCTTCTGCCCGCCCACACGCTTCGACTACCAGCCACACATGGGCGATGAGGTGTGTCAGGTGAGTGCCCAGCAGCCGGTGCAGACGGAGCTCCTGATGCGTCACCACCAGCTCCAGTCCCGCCTGGGCACGCTCAAGATAGAGAACGAGGAGGTAAGAAAGACCCTGGATGCCACCATGCAGACGCTACAGGACATGCTGACGGTCGAGGACTTTGATGTGTCTGAGGCTTTCCAGCACAGCCAGTCTACTGAGTCGGTCAAGTCTGCCTCGTCCGACTCCTACATGAGCAAGGTCAACGTTGCTAAGAGACGAGCCAACCAGCAGGAGACGGAGGGCTTCTACTTCACTAAATTTAAAGAGTACCTGAATGGCAGCAACCTTATAGTTAAACTACAGGCCAAGCATGATCTACTGAAGCAGACGCTAGGAGAAGGAGAAAGGGCTGAATATGGAACAACAAGGCCCCCCACTCTTCCCCCTAAACCCGGGAGAATGCGGAAGCCTAGACCTCGCTCCATTTTTAATCATAAACTCTTTAATGGCAATATGGAGGCCTTCATCAAGGACTCAGGGCAGGCCATACCAGTGGTGGTTGAGAGCTGTGTACGCTACATCAATCTATATGGCCTTCAGCAGCAGGGCATATTCAGGATTCCCGGCTCACAGGTCGAAGTCAACGATATAAAAAATTCATTTGAGAGAGGTGAGGACCCATTGGTGGATGATCAGAGTGACCATGACATCATGGCGGTGGCAGGGGTTCTGAAGCTGTACTTCAGGGGGTTGGAGACCCCACTGTTCCCCAAAGAACGCTTCCTCGACCTCATGTCTACCATCAAACTAGACTCTGGTGCAGAGAGAGCTCATCACCTTCAGCAGATCGTTGTAACTCTTTCTCGCCCCGTCATCATCGTCATGAGATACCTGTTTGCATTCCTCAACCATCTATCCCAATACAGTGATGAGAACATGATGGATCCCTATAACCTGGCTACCTGCTTCGGCCCGACTCTGATGCCCATACCTGATGACCATGATCCTGTGGCCTGCCAGACGCACGTTAATGAGGTCATCAAGACCATCATCATCCACAACGAGGTCATCTTCCCGAGTCACCGTGAGCTGGACGGACCAGTCTATGAGAAGTGCatggctggaggagaggagtactGTGACAGTCCCCATAGTGAGCCAGGTGCCATTGATGAAGTGGACAATGGTACAGGACCTCCCACCAGTGATGATGAACTGGAGCAAATCGAGGCCATTGCTAAGTTCGACTACGTGGGGCGAACTCCCAGAGAGCTTTCCTTTAAGAAGGGGGCATCCCTGCTGTTGTACCTGAGAGCCTCTGATGACTGGTGGGAGGGACGACACAACGGAGTGGATGGACTCATCCCACATCAGTATATCGTGGTGCAGGACATGGACGATGCATTCTCAGACAGTCTGAGTGGGAAGCCTGAGAGTGAAGCCAGTAGTGGACCCCACcaggaggacagagacaagacctCATCCATGAACCAAGACCATGACCGCAGCTCCCCCTGCGAACACACACAGCATACCCCTGATCACCGCTATGGAGCTGCTTTGGGAAGGGTGAGGGTTCGTTCAGATGGTGCTGCTATCCCTCACCGCAGGAGCACAGCCGACACCCACAGCCCCACCAGAGGTATGGACATGCCCCCTAGGGTCATACCTCGCCCCTGCAGCCCTCACAAGATGTCCGTCAGCAGGGGCCGCATGGACAGTCCAGAGAAGCACCATCTCAGCACGTTTGGCAGCGCTGGAAGTATCAACCACCCAGACAGGAAGTGCTTCCCCGATGGCTCCGTCCTCAGACCATCCACCGGCTCCACCCGCCATGGTAGCCTTGGTGACCACAAATCACTGGAGGCTGAGGCCCTGGCAGAGGACATAGAAAAGACCATGAACACCGCCCTGCATGAGCTACGTGAGCTGGAGCGTCAGAACGTGGCCAAGCACGCTCCCGATGTGGTCCTGGACACCTTGGAGCCCCTGAAGCAGCAGCAACCCTCCTCCTCCGGGTCCAGACCACCCTCTGAGCCCCCCGGCAGCCCCCTCCACACTAACACCATGGCCATCCGGGACCCTGACGCTGCCCTACGCCGTAGCAGCTGTTCCTCGTCCTCCGAGACCATGAGCACCTTCAAACCGACTGCACGGAGGCCCATCGCCCCCCTGAGGCCACCGCCGATCAGACCACTCCGGCCTGCCCCCATCCACCCGGGACATGGCCATGGACAGGGGCAGCACAGGTCCAGTAGTTCCAGCTCCTCAGGCATGGGTAGTCCAGCCTCTATCACCCCCACAGACAGGGTGTTCCCCAAGgcaccatccccatccccctccaCTTCCTCTTCGTCCTCAGACAAACAGGGTAACATGTAGCCTGGCTGAGCAGGCTGCAGCAGTCCCAGACAGAGCCCAGGAACTGTAGTATGGAACTGACTGAGCTGGCTGCAGCATAGCCCTATATAGGACACATATGTGCATCCACGCATATGGCTGTCCTAGAAGGCTAAAATGTGGAGCCTGGAAAATAACTGGCTAAATGTTTTAGGGGGTTCGTGTTTCTGAAAATCCTGCTACTGAAGGCATATCTATATTCTGTAACTCCTTGTTCGTCCATACTGATAGTATAATGTGTGgatatctgtaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1673506 lncRNA upstream 248298 53543305 ~ 53545720 (+) False G1462930
TU1674525 lncRNA downstream 8895 53870031 ~ 53870400 (+) True G1463860
TU1674529 lncRNA downstream 11770 53872906 ~ 53873220 (+) True G1463864
TU1674530 lncRNA downstream 12285 53873421 ~ 53873736 (+) True G1463865
TU1674536 lncRNA downstream 17500 53878636 ~ 53878908 (+) True G1463871
TU1674537 lncRNA downstream 18028 53879164 ~ 53879363 (+) True G1463872
XM_021568797.2 mRNA upstream 97530 53686160 ~ 53696488 (+) True si:dkey-7k24.5
XM_036950125.1 mRNA upstream 115853 53670309 ~ 53678165 (+) False LOC110494086
XM_036950126.1 mRNA upstream 115853 53670309 ~ 53678165 (+) True LOC110494086
NM_001160635.2 mRNA upstream 168807 53620749 ~ 53625211 (+) True pb1
XM_036950123.1 mRNA upstream 251065 53539754 ~ 53542953 (+) True LOC110494083
XM_021568799.2 mRNA downstream 108361 53969497 ~ 53977112 (+) True LOC110494090
XM_036950132.1 mRNA downstream 167888 54029024 ~ 54043837 (+) True LOC110493211
XM_021568802.2 mRNA downstream 191847 54052983 ~ 54090080 (+) False LOC110494093
XM_036950133.1 mRNA downstream 213450 54074586 ~ 54090080 (+) True LOC110494093
XM_036950134.1 mRNA downstream 263289 54124425 ~ 54165315 (+) True LOC110494094
TU1670644 other upstream 2703129 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 2896574 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3016946 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 3358312 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 3610322 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 312878 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 395245 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 610569 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 610809 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 2135512 55996648 ~ 55998174 (+) False G1466124

Expression Profile