RNA id: TU1674530


Basic Information

Item Value
RNA id TU1674530
length 316
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1463865
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 53873421 ~ 53873736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAAAAACTGAGCCCAGAATAGACATgcttgttgaaaacttcaaccagccacacacctctcattagaactgtgtgtctgtgtgtatgttttctggtctacatctgtgtgacgtgatcaatcagtttattccagttcagaataaagaATATGCATTTTAACAGCAGCAGTTCCAACCAAGACTTTCTATCAACAATAATTcatacagtaagatgtacagtaggcctgacattttttttttttttatctgtactgttacttaggTTAGCACGATCAAAAaacctgtgtgtgttctgttttaCATCtctgtttattcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674529 lncRNA upstream 201 53872906 ~ 53873220 (+) True G1463864
TU1674525 lncRNA upstream 3021 53870031 ~ 53870400 (+) True G1463860
TU1673512 lncRNA upstream 327701 53543305 ~ 53545720 (+) False G1462930
TU1674536 lncRNA downstream 4900 53878636 ~ 53878908 (+) True G1463871
TU1674537 lncRNA downstream 5428 53879164 ~ 53879363 (+) True G1463872
TU1674552 lncRNA downstream 16549 53890285 ~ 53890839 (+) True G1463887
TU1674564 lncRNA downstream 23254 53896990 ~ 53897266 (+) True G1463899
TU1674616 lncRNA downstream 67592 53941328 ~ 53941530 (+) True G1463949
XM_036950127.1 mRNA upstream 12285 53794018 ~ 53861136 (+) False LOC110493210
XM_036950128.1 mRNA upstream 12285 53794018 ~ 53861136 (+) False LOC110493210
XM_036950129.1 mRNA upstream 12285 53794018 ~ 53861136 (+) False LOC110493210
XM_036950130.1 mRNA upstream 12285 53794018 ~ 53861136 (+) True LOC110493210
XR_005037005.1 mRNA upstream 21722 53794018 ~ 53851699 (+) False LOC110493210
XM_021568799.2 mRNA downstream 95761 53969497 ~ 53977112 (+) True LOC110494090
XM_036950132.1 mRNA downstream 155288 54029024 ~ 54043837 (+) True LOC110493211
XM_021568802.2 mRNA downstream 179247 54052983 ~ 54090080 (+) False LOC110494093
XM_036950133.1 mRNA downstream 200850 54074586 ~ 54090080 (+) True LOC110494093
XM_036950134.1 mRNA downstream 250689 54124425 ~ 54165315 (+) True LOC110494094
TU1670644 other upstream 2782532 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 2975977 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3096349 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 3437715 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 3689725 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 300278 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 382645 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 597969 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 598209 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 2122912 55996648 ~ 55998174 (+) False G1466124

Expression Profile