RNA id: TU1674536


Basic Information

Item Value
RNA id TU1674536
length 273
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1463871
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 53878636 ~ 53878908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATTAACTATCGAAGATGTGACAAAGAAATTCTCTCCAGCTGGGTTTTGCTAACTTGCTAAGTGGCTACCGTTAGCTTGCTAGATCAAACTTCTTGGAAACAGCAGCAGAGACAAgcctaatatttgttttgtgtgtgctgCAAACTGAGTTTTGAGATACTTGCATAActttataacattaacaatgtctacactgtatttctgatcaatttgttgttattttaatggacaaaaaaacttGCTTTTGtttcaaaagcaaggacatttctag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674530 lncRNA upstream 4900 53873421 ~ 53873736 (+) True G1463865
TU1674529 lncRNA upstream 5416 53872906 ~ 53873220 (+) True G1463864
TU1674525 lncRNA upstream 8236 53870031 ~ 53870400 (+) True G1463860
TU1673514 lncRNA upstream 332916 53543305 ~ 53545720 (+) False G1462930
TU1674537 lncRNA downstream 256 53879164 ~ 53879363 (+) True G1463872
TU1674552 lncRNA downstream 11377 53890285 ~ 53890839 (+) True G1463887
TU1674564 lncRNA downstream 18082 53896990 ~ 53897266 (+) True G1463899
TU1674616 lncRNA downstream 62420 53941328 ~ 53941530 (+) True G1463949
TU1674635 lncRNA downstream 88668 53967576 ~ 53968890 (+) True G1463968
XM_036950127.1 mRNA upstream 17500 53794018 ~ 53861136 (+) False LOC110493210
XM_036950128.1 mRNA upstream 17500 53794018 ~ 53861136 (+) False LOC110493210
XM_036950129.1 mRNA upstream 17500 53794018 ~ 53861136 (+) False LOC110493210
XM_036950130.1 mRNA upstream 17500 53794018 ~ 53861136 (+) True LOC110493210
XR_005037005.1 mRNA upstream 26937 53794018 ~ 53851699 (+) False LOC110493210
XM_021568799.2 mRNA downstream 90589 53969497 ~ 53977112 (+) True LOC110494090
XM_036950132.1 mRNA downstream 150116 54029024 ~ 54043837 (+) True LOC110493211
XM_021568802.2 mRNA downstream 174075 54052983 ~ 54090080 (+) False LOC110494093
XM_036950133.1 mRNA downstream 195678 54074586 ~ 54090080 (+) True LOC110494093
XM_036950134.1 mRNA downstream 245517 54124425 ~ 54165315 (+) True LOC110494094
TU1670644 other upstream 2787747 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 2981192 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3101564 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 3442930 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 3694940 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 295106 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 377473 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 592797 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 593037 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 2117740 55996648 ~ 55998174 (+) False G1466124

Expression Profile