XLOC_033416


Basic Information

Item Value
gene id XLOC_033416
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 5943810 ~ 5947127 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068548
ctggcagagtggtgataaaacaaaaagctattggctgttttttaaggggaggagctactatatgtcCAGCCCACTTTTCATGTTTCAGTTAAGATTACATGAAACATCGGAtacaaaatgcatatttcaaagcacttcacaggactttTAAACGCAAGTGAAACTCAAGCCAAACCATTCTGGTGTACGTGGCTCCTAAtataacttaattaaaataaaattacttagAAATCAACCCATATTATGACTGAAACCATGATTTCCTGAGGACAACTTAGAGGCTGTGTGGACCAGGGGAGGCCAAGCTGGAGCACTTACTCTGGTCTCCCAGGGCTTTGCGAAGGTTGGGGAAATTTGAAATAGAACCAAAACAAACTACTACAATTGACTTACAATTggcaatgaaaaaataaattacaaccagCAAAGCCTGggaagttttaaataaataaaaaaacttttacaatCAAACTATCTGTCTTGAAGCACGATTGAAATCACTCCAAAGTAATTGGCGGGAAGTCACTTAATATTAGGAAATtgtctgaaatacaacatctgaacagtgacTTTAGCAGTGGGAACCATAGTATACTATAAGCTGAATAATTGTCTCTGGTCTGTTgaattatttgaaaacaacattgtgttcagtttttttttctaataattcaacagtaACATCACCTTGAGTGTGCATTATTTACTAATAATTCTACCTTTTGTTGTCAGCTGGTGCATACTCAGTGTAGTTACAGATGTAAGGTTTTATATTGATTCATTGTCTCTCTGTTGTTCAGGGATGAGCAGTGAGTCTGGAGACATAATATATTCTGAAGTAAAGCACAACGCAGATGGAGGTGCTGATGCTGGAGGTGATGCAATATATGCTCAAGTTTTGAGTAAGAAGAAGAAAACACGTCTGTGAGTGCAGTGATGAAAACAGACACCAGAAGAACACCAGCGCTCGCTTTGCTTTAGAAATTAATCTGAATGAACTGCTTCTGCACATGAATCACACATACAATACATATACAAGATAAACTGCATTTTAAGCATATATACCCTGTTTTTACTTATATGTTTTGTAAATTGTGTTTCCACTGACCATTTATGTTTTAAGGCAGATctaataaaatagctttaattattttattggtgCTGCACAAATATAATGTAAGCAGAAATTAGTTTTATACATGTAAATTCAATGAGACTGATAAaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068548 True 1226 lncRNA 0.35 3 5943810 5947127

Neighbor

gene id symbol gene type direction distance location
XLOC_033415 si:dkey-23a13.11 coding upstream 1034 5920665 ~ 5942776 (+)
XLOC_033414 CU459186.1 coding upstream 30281 5913030 ~ 5913529 (+)
XLOC_033413 si:dkey-23a13.9 coding upstream 31436 5911670 ~ 5912374 (+)
XLOC_033412 si:ch211-113a14.22 coding upstream 32821 5910467 ~ 5910989 (+)
XLOC_033411 hist1h4l coding upstream 34134 5909271 ~ 5909676 (+)
XLOC_033417 si:dkey-23a13.12 coding downstream 1256 5948383 ~ 5948685 (+)
XLOC_033418 zgc:171759 coding downstream 8033 5955160 ~ 5956028 (+)
XLOC_033419 CU459186.2 coding downstream 9810 5956937 ~ 5957597 (+)
XLOC_033420 zgc:165555 coding downstream 12076 5959203 ~ 5959818 (+)
XLOC_033421 zgc:112234 coding downstream 13364 5960491 ~ 5961503 (+)
XLOC_033406 NA non-coding upstream 116310 5826581 ~ 5827500 (+)
XLOC_033405 NA non-coding upstream 125434 5814145 ~ 5818376 (+)
XLOC_033404 BX000524.1 non-coding upstream 159657 5737873 ~ 5784153 (+)
XLOC_033403 BX005156.1 non-coding upstream 335773 5573759 ~ 5608037 (+)
XLOC_033401 BX005156.2 non-coding upstream 379273 5561558 ~ 5564537 (+)
XLOC_033428 NA non-coding downstream 106718 6053845 ~ 6057362 (+)
XLOC_033429 NA non-coding downstream 302265 6249392 ~ 6252661 (+)
XLOC_033435 CU459024.1 non-coding downstream 750846 6697973 ~ 6698091 (+)
XLOC_033443 NA non-coding downstream 1318555 7265682 ~ 7275388 (+)
XLOC_033444 NA non-coding downstream 1328724 7275851 ~ 7279896 (+)

Expression


Co-expression Network