XLOC_033418 (zgc:171759)


Basic Information

Item Value
gene id XLOC_033418
gene name zgc:171759
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 5955160 ~ 5956028 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065442
ACTCTATGGGCGGGGTCATGAAGACACCCAATCGCAATCCTCCGTTTTTCCGCTTTCAAATTAGCATAGGACAGGGTATAAAATCCCCCGATTTGTATAAACGTTTACGTTACTCTGAGGAAAATTAAGTTCTTACACCATGCCTGAACCAGCGAAGACCGCACCTAAGAAGGGCTCAAAGAAAGCGGTGACTAAAGCcgctggtaaaggaggaaagaagCGCAAGAGGACAAGAAAGGAGAGCTATGCCATCTACGTGTACAAGGTGCTGAAGCAGGTTCATCCTGACACTGGAATCTCCTCAAAGGCGATGGGCATCATGAACTCGTTCGTCAACGACATTTTCGAGCGCATCGCCGGTGAGGCTTCCCGTCTTGCTCATTACAACAAGCGCTCCACCATCACATCGAGAGAGATCCAGACCGCCGTGCGTCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTATCTGAGGGCACAAAGGCCGTCACTAAGTACACCAGCTCCAAGTAAAGCGCCGAGTCATCTACTGCTACccaaaggctcttttaagagccacccatACTGTCTTTAAATGAGCTTATCTTAAACGTGTTATTTGTTTACTCGCAAAATTCACATCGAAGCACAAACTCTGGCTTAAGTGCTAGAATATTAATGGTCTTCAAACATATATACGGATGTGTACGTACTTCGTCTATTAATAATTAActtgtaaagtaatgttttctgtgttttgcTATATGTAGTGTGATAGATGAAGAAAGCAGGAAGCTTGTAATCATTGgcttgcatggtctttgtttttcGGCATTCATGgaaatatcatttttattttcgaataaagaaactcaaaggtttaatcACT

Function

symbol description
zgc:171759 Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100259

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065442 True 869 mRNA 0.44 1 5955160 5956028

Neighbor

gene id symbol gene type direction distance location
XLOC_033417 si:dkey-23a13.12 coding upstream 6475 5948383 ~ 5948685 (+)
XLOC_033416 NA coding upstream 8033 5943810 ~ 5947127 (+)
XLOC_033415 si:dkey-23a13.11 coding upstream 12384 5920665 ~ 5942776 (+)
XLOC_033414 CU459186.1 coding upstream 41631 5913030 ~ 5913529 (+)
XLOC_033413 si:dkey-23a13.9 coding upstream 42786 5911670 ~ 5912374 (+)
XLOC_033419 CU459186.2 coding downstream 909 5956937 ~ 5957597 (+)
XLOC_033420 zgc:165555 coding downstream 3175 5959203 ~ 5959818 (+)
XLOC_033421 zgc:112234 coding downstream 4463 5960491 ~ 5961503 (+)
XLOC_033422 si:dkey-23a13.17 coding downstream 8268 5964296 ~ 5965015 (+)
XLOC_033423 CU459186.3 coding downstream 9583 5965611 ~ 5966108 (+)
XLOC_033406 NA non-coding upstream 127660 5826581 ~ 5827500 (+)
XLOC_033405 NA non-coding upstream 136784 5814145 ~ 5818376 (+)
XLOC_033404 BX000524.1 non-coding upstream 171007 5737873 ~ 5784153 (+)
XLOC_033403 BX005156.1 non-coding upstream 347123 5573759 ~ 5608037 (+)
XLOC_033428 NA non-coding downstream 97817 6053845 ~ 6057362 (+)
XLOC_033429 NA non-coding downstream 293364 6249392 ~ 6252661 (+)
XLOC_033435 CU459024.1 non-coding downstream 741945 6697973 ~ 6698091 (+)
XLOC_033443 NA non-coding downstream 1309654 7265682 ~ 7275388 (+)
XLOC_033444 NA non-coding downstream 1319823 7275851 ~ 7279896 (+)

Expression


Co-expression Network