XLOC_033428


Basic Information

Item Value
gene id XLOC_033428
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 6053845 ~ 6057362 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068549
GGACAGGTTATGGAAAATCCCAGCGGTCTCATTGGCCCAGCTCTTATGTTTACGTTAATATTTgtttaccctttttttttttttttttaaagaaataccaAGGTATTTCGCAAATTTATCTTGCTTATATCTAAAAAATATTAGTACAAAATAAGGTACAatacataattataaatataaaagatatcAACTAAAATTATAAGTATTGTTACTGataaaactcaaaacaaaatcGTAATAATTGTTTTGATAAGCATACAATCGTCTTTTAACACTCTAGTGACCAACGTAAAACATTACTCATTTAATAAGAGAATACATCAGTGTGATATTTTTATGAATTATGACCTCAGAAATGTTTCAATGTACTAcatataatgaattttaaataacaattaacattacatgaataaaataaaaaataaagacatggATATCATTTGATAAAAGGTTTCCATCTGACGTCATGTCCCTTGGTGATGGATGCCTTGCTTCTGATTGGATGCGCCTCACTGTCAATCCACATGGACATCCATCTGACGTCATGTACCTTGGTGATGGATGTCTCGCTTCCGATTGGATGCGCCACATTGTCAATCAACatttattatatgaataaaaataataaacaaaaatgcatgAACATCATTCGATAAAGGTTTCCATCTGACGTCATGAGCCTTGGTGATGGATGTCTCGCTTCTGACTGGATACACATCACTGTCAATTCTTTCAGTTGTACAACAGACAGCATACTTCTGAGGATGGCAACACCGTACAGCCGCCCACCACCACTGCACATCACCTGTGTTAAAGTGCACAGTAGCCAAAAGGCTGTGACCTttattaaacatgaaaacaaaataattgttgaCACCTACAAAGTCACATCTTTATGTGCCCTTACGGATGGTGATGCAGTTTATCTGTCCATAAAAAACGGCAGTGACCCTGAATTTGAAGAGGGACACtcatatattgtaaaaaatgtaaccATCTCAAACAAATATGGCCGCCgatgtttatttgtaaataaaggcACCATCAAATTTAGGACCGCTCCGCTAGCCATAAGTGAGGAGGCTAAAAGAGCTGCAAGGGAGGCCCTCTGTCCTCCTTCACGACCTATAACAGGAGAGGAAGAGGATATCTTCAGTGAAACTGGGTACCTGAGTCTACGGGGGCAGTTAGAAAAAGtaagtgaattcattcattcattttcttttcggcttagtccctttattaatttgggggtCGCTACttcagaatgaaccgctaacttatccagcatttgttttacgcagcagatgcccttccagctgccagccatctctggaaaacatccactcatacacatatacactcattcacaacagacaatttactctacccaattcagctgtaccgcatgtctttagacaggCGATTTCTGCTAATGTTGACACTTCAAATCACCAAAACATACAGTCCGACTTAATGACAGTAAACTCTTGTGTCaggattaagaaaaaaataaataaataaaaacactatagtacTTACCTTTTTGTCATTTTCCAGGTTGAAGTGCCTAGAATGACTCGCACTCACATACCGATCCTGGACCTGCGGATGAAATGTGGCTCCGTAGTACACGATGTCTCACTGTGGCGGGAAGAAGCACTTAACGAGCTCTATGTCGGGGACATCATTGAGCTCAGTCACCTGAAAGTAAACGGAAGACCAGATGGAAGAGCAAAATTCGACTCTTCTAATCACACAACTTTTAAGGTAAACATTATATGCTGCACATCTGTAatccacacacatttaaaagTGTTAACCTTCAAGAGACATTAAAAATTTAGAAATGAAATGACATTGTTGCCTTAATAACGATTATAGTAGTGTCAGATGAACAGTGGATAAAACATCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068549 True 1916 lncRNA 0.37 2 6053845 6057362

Neighbor

gene id symbol gene type direction distance location
XLOC_033426 si:dkey-23a13.21 coding upstream 76603 5976613 ~ 5977242 (+)
XLOC_033425 hist1h2a11 coding upstream 77854 5975194 ~ 5975991 (+)
XLOC_033424 zgc:163040 coding upstream 84854 5968225 ~ 5968991 (+)
XLOC_033423 CU459186.3 coding upstream 87737 5965611 ~ 5966108 (+)
XLOC_033422 si:dkey-23a13.17 coding upstream 88830 5964296 ~ 5965015 (+)
XLOC_033429 NA coding downstream 192030 6249392 ~ 6252661 (+)
XLOC_033430 si:ch211-220f21.3 coding downstream 260504 6317866 ~ 6339577 (+)
XLOC_033431 si:ch73-368j24.17 coding downstream 328302 6385664 ~ 6394666 (+)
XLOC_033432 FP340257.1 coding downstream 363073 6420435 ~ 6438540 (+)
XLOC_033433 si:cabz01036022.1 coding downstream 422850 6480212 ~ 6521757 (+)
XLOC_033416 NA non-coding upstream 106718 5943810 ~ 5947127 (+)
XLOC_033406 NA non-coding upstream 226345 5826581 ~ 5827500 (+)
XLOC_033405 NA non-coding upstream 235469 5814145 ~ 5818376 (+)
XLOC_033404 BX000524.1 non-coding upstream 269692 5737873 ~ 5784153 (+)
XLOC_033403 BX005156.1 non-coding upstream 445808 5573759 ~ 5608037 (+)
XLOC_033435 CU459024.1 non-coding downstream 640611 6697973 ~ 6698091 (+)
XLOC_033443 NA non-coding downstream 1208320 7265682 ~ 7275388 (+)
XLOC_033444 NA non-coding downstream 1218489 7275851 ~ 7279896 (+)
XLOC_033446 NA non-coding downstream 1362850 7420212 ~ 7422923 (+)

Expression


Co-expression Network