XLOC_033425 (hist1h2a11)


Basic Information

Item Value
gene id XLOC_033425
gene name hist1h2a11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 5975194 ~ 5975991 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065449
GCTAGCTGATTGGTTTGTAATGTCTTCCGTTTCCAGCCAATAGCACAGTCGCTCGCTTTCTTTTAAAAAGGCGCACCACGGACATTCGTGTTATTGTTTCCTCAGGTGGCAAATCAGTTATATCTTGATCAAGATGAGCGGAAGAGGCAAAACCGGTGGCAAAGCCCGCGCCAAGGCCAAGACTCGCTCATCCAGGGCGGGTCTGCAGTTTCCTGTCGGCCGTGTTCACAGACTTCTTCGCAAAGGCAACTATGCAGAGCGCGTTGGTGCGGGAGCTCCAGTGTATCTGGCTGCTGTGCTCGAGTATCTGACCGCTGAGATTCTGGAGTTGGCTGGAAACGCCGCTCGTGACAATAAGAAGACCCGCATCATCCCCAGACACCTTCAGCTGGCTGTACGCAATGATGAGGAGCTGAACAAGCTTTTGGGTGGAGTGACCATCGCTCAGGGTGGTGTGCTGCCCAACATCCAGGCCGTGCTGCTGCCCAAGAAAACCGAGAAGGCCGCCAAGAAATAAACCGtttaagttttaaaactaaaggctcttttaagagccacccatTTCCTCCTTAAAAGAGTGTTTTGCATTCAGGTGGAGCTGGTATTCACTGATACTGCTGAAAGTAAAGCAAAGTTTAGTACAAATTTGTTTTCTAAATCAAACCCTTTCGTCGAAGCTCAAATATGCCTCGAGTTCGTTTTATAATTCCTTTACAAGTCAAAAAGTTTATAAAATGCTTTACAGTTTGAGTTTAAAAGATCTCTAGGCAAAATTatattgaatgtaaaaaaaaaaaa

Function

symbol description
hist1h2a11 Predicted to enable DNA binding activity. Predicted to be involved in chromatin silencing; defense response to other organism; and membrane disruption in other organism. Predicted to be located in extracellular space. Predicted to be part of nucleosome.

GO:

id name namespace
GO:0051673 membrane disruption in other organism biological_process
GO:0045087 innate immune response biological_process
GO:0006325 chromatin organization biological_process
GO:0006342 chromatin silencing biological_process
GO:0050830 defense response to Gram-positive bacterium biological_process
GO:0000786 nucleosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081205-1 Predicted to enable DNA binding activity. Predicted to be involved in chromatin silencing; defense response to other organism; and membrane disruption in other organism. Predicted to be located in extracellular space. Predicted to be part of nucleosome.

Ensembl:

ensembl_id ENSDARG00000100906

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065449 True 798 mRNA 0.46 1 5975194 5975991

Neighbor

gene id symbol gene type direction distance location
XLOC_033424 zgc:163040 coding upstream 6203 5968225 ~ 5968991 (+)
XLOC_033423 CU459186.3 coding upstream 9086 5965611 ~ 5966108 (+)
XLOC_033422 si:dkey-23a13.17 coding upstream 10179 5964296 ~ 5965015 (+)
XLOC_033421 zgc:112234 coding upstream 13691 5960491 ~ 5961503 (+)
XLOC_033420 zgc:165555 coding upstream 15376 5959203 ~ 5959818 (+)
XLOC_033426 si:dkey-23a13.21 coding downstream 622 5976613 ~ 5977242 (+)
XLOC_033427 si:dkey-23a13.22 coding downstream 1716 5977707 ~ 6243430 (+)
XLOC_033428 NA coding downstream 77854 6053845 ~ 6057362 (+)
XLOC_033429 NA coding downstream 273401 6249392 ~ 6252661 (+)
XLOC_033430 si:ch211-220f21.3 coding downstream 341875 6317866 ~ 6339577 (+)
XLOC_033416 NA non-coding upstream 28067 5943810 ~ 5947127 (+)
XLOC_033406 NA non-coding upstream 147694 5826581 ~ 5827500 (+)
XLOC_033405 NA non-coding upstream 156818 5814145 ~ 5818376 (+)
XLOC_033404 BX000524.1 non-coding upstream 191041 5737873 ~ 5784153 (+)
XLOC_033403 BX005156.1 non-coding upstream 367157 5573759 ~ 5608037 (+)
XLOC_033435 CU459024.1 non-coding downstream 721982 6697973 ~ 6698091 (+)
XLOC_033443 NA non-coding downstream 1289691 7265682 ~ 7275388 (+)
XLOC_033444 NA non-coding downstream 1299860 7275851 ~ 7279896 (+)

Expression


Co-expression Network