XLOC_033424 (zgc:163040)


Basic Information

Item Value
gene id XLOC_033424
gene name zgc:163040
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 5968225 ~ 5968991 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065448
ATTATACGTCGAATTGTCACTGCGATCATGTCCGGAAGAGGCAAAGGCGGTAAAGGACTGGGAAAAGGTGGCGCTAAGCGTCATCGTAAGGTTTTGCGTGATAACATCCAGGGAATCACCAAACCCGCCATTCGTCGTCTCGCTCGCCGTGGTGGAGTCAAGCGTATCTCTGGTCTGATCTACGAGGAAACCCGTGGCGTGCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCTGTTACCTACACTGAGCATGCCAAGAGAAAGACCGTGACCGCCATGGATGTAGTTTACGCGCTGAAACGACAGGGACGCACTCTGTACGGGTTCGGCGGTTAGACCCCAACGATCGGTCGTTATATcaaaggctcttttaagagccacccacATTGTCATAAAAGAGGCTTTAGACTACTTGATATTTGGTTTCTAGAGTAACTacatattttgaaaattaatattccATGGGAAACCAGATAGACGCAGTGAGGAGTGTCGCTGATCAAATCAAAGTCCTACCCTAATTACTTATAGTACTATTGTAATCTGTTCACATCGCTAAAAACCAAAATGATAATCAGAAAAACGTAATAATTGTCCTTTATGTTCTTGTATTGAGTCACTGAGCCACATGGGGGCGCTAGTAGTTACTTTAGGGCCTATAAAAGGGTAAAGGAAGAATGTGTGGGAGGATCATTGTGTTGTCCATGTGGCATGCAGAGCTGTTTGCTGTTTAGCTCTGAAGCTAATAAATCTTGATCTTAAAA

Function

symbol description
zgc:163040 Predicted to enable DNA binding activity. Predicted to be involved in nucleosome assembly. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome.

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-79 Predicted to enable DNA binding activity. Predicted to be involved in nucleosome assembly. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome.

Ensembl:

ensembl_id ENSDARG00000099920

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065448 True 767 mRNA 0.45 1 5968225 5968991

Neighbor

gene id symbol gene type direction distance location
XLOC_033423 CU459186.3 coding upstream 2117 5965611 ~ 5966108 (+)
XLOC_033422 si:dkey-23a13.17 coding upstream 3210 5964296 ~ 5965015 (+)
XLOC_033421 zgc:112234 coding upstream 6722 5960491 ~ 5961503 (+)
XLOC_033420 zgc:165555 coding upstream 8407 5959203 ~ 5959818 (+)
XLOC_033419 CU459186.2 coding upstream 10628 5956937 ~ 5957597 (+)
XLOC_033425 hist1h2a11 coding downstream 6203 5975194 ~ 5975991 (+)
XLOC_033426 si:dkey-23a13.21 coding downstream 7622 5976613 ~ 5977242 (+)
XLOC_033427 si:dkey-23a13.22 coding downstream 8716 5977707 ~ 6243430 (+)
XLOC_033428 NA coding downstream 84854 6053845 ~ 6057362 (+)
XLOC_033429 NA coding downstream 280401 6249392 ~ 6252661 (+)
XLOC_033416 NA non-coding upstream 21098 5943810 ~ 5947127 (+)
XLOC_033406 NA non-coding upstream 140725 5826581 ~ 5827500 (+)
XLOC_033405 NA non-coding upstream 149849 5814145 ~ 5818376 (+)
XLOC_033404 BX000524.1 non-coding upstream 184072 5737873 ~ 5784153 (+)
XLOC_033403 BX005156.1 non-coding upstream 360188 5573759 ~ 5608037 (+)
XLOC_033435 CU459024.1 non-coding downstream 728982 6697973 ~ 6698091 (+)
XLOC_033443 NA non-coding downstream 1296691 7265682 ~ 7275388 (+)
XLOC_033444 NA non-coding downstream 1306860 7275851 ~ 7279896 (+)

Expression


Co-expression Network