XLOC_033766 (rras2)


Basic Information

Item Value
gene id XLOC_033766
gene name rras2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 27834130 ~ 27887883 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066056
AGTGCCTGGTAGCGATTTGGACGAGGGCGTATGGACTTGAAGCAGCAGTGTATGCATTTCCCACAGACTGTGGTCGTACTTTTCTCCTGTCGGACGGATTACCACTGAGTTGACACATAGCCCAAAAGCCGCTTCGCATTTTTTCCGCTGCATTTCTCTAACTGAAGGCCTGTCACAGAGTAAAGTGGCTCGGTGTGCGTGTGTTTAGACAGCGGAGCGAGAGCAGCAGTGTGTCCCCGATGGCTGGCTGGAAGGACGGCTCAGTGCAGGAGAAATATCGCCTGGTGGTCGTCGGAGGTGGTGGCGTCGGAAAATCAGCGTTAACCATCCAGTTTATCCAGTCATACTTCGTCACTGACTATGACCCCACGATTGAAGACTCGTACACAAAGCAGTGTGTGATTGACGAGAGGCCTGCACGGCTGGATATCCTGGATACAGCAGGACAGGAAGAGTTCGGAGCCATGAGAGAACAATACATGAGGACAGGGGAGGGTTTCCTTCTGGTCTTCTCTGTCACCGACCGGGGAAGTTTTGAAGAGATCTACAAGTTTCAACGGCAGATCTTGAGAGTGAAGGACCGAGATGAATTTCCCATGATTCTAGTTGGTAACAAAGCTGATCTTGAGCAACAGAGACAAGTGACCCAAGAGGAAGGACAGCAGCTCGCTCGACAACTCAAAGTCACATACATGGAGGCCTCAGCTAAAATCCGGATGAATGTAGACCAGGCTTTCCACGAACTGGTCCGAGTCATAAGGAAGTTCCAGGAGCAGGAGTGTCCACCTTCACCAGAGCCCACGCGCAAAGAAAAGGACAAGAGTGGCTGCCACTGCGTGATCTTCTGATTGGCCGCCAAGTGCCGCCAATCACCCAGCTGCTGTCACCGGCCCCTCCCCCCACACACACCCTGCCTTCTGACATCACGTCCTGTGCGGATCAGTTCGCTGCCTTTCTACATGTGCATGTCTTCAAATCAGCAGTCGCTCTCATAGCCTTATCAGGGGGCCTTTATGCCTCCAGGACTTCACTACTAGAAAAACCAAACTGACAAAATCTTGACAGAACTCACCATTCTACCTTCAACTAGAGTACTGACATCAGCGTGACCTAGAATATGGTAATTGTGCCCCAACACTAAACATCGCTtattacaaaaacacacacgcgcacacacacaatttcttttttttttgtatttcgaAGGATTTTTGTTTCCTCTTGCCTTGTGACATTTGTACTCTTGCTACGATTTAAAGGATTAAACGAAACACCGTTGGGATTGCGAATGACTACTTTTAGTCATCGGTCTTTTAGAGATGACGTTCTAaagctttgtttgtgtgtgtgtgtgtcgtgccATATCTGTTTTTACTTGCATATGTTAAGCAGCGATTGTACATAAGTGAAAATTTGTGTGAGTTGAGACCACCTTTATATTGTGTGCGCGCGAGTTTGACCAGCTTGTTTTGACATGTGTTAAAATGGTAATGTATACTCGCAGAAATGTACATATATAGATAGCCTCTAACATGATGCCAACTTTGTCAGTAGTGAAgtcgttttttaattttttaatttcttgttttatttctcgATATGCCttttttttggtctgcttttttgcattttaagGCTTCTTGGCGTGTATGGATTTGAttattttaagggatagttcgACTAAAGAATGAAAATTTAAACTCTTGTTTCATGTTAAACCCCTGCAGGCACaaaacatcaacatgatgtcatattgacgcTTTACCTCAACGTCgtggggatgttggattttgtttgtaaatgaaaagcAGGTTGATGTCAGAATGTCTAAcgtccaacttaaaatcaacctaaaatcaaccaaatatcaacgtttactcatgttacaccttgacgttgtgtggacgttacaacTATGACatcagacgttagattttggtcacttttcaacacaacctaaaatcaaccaaatatcagtgtAATTGGatatcattattggacatcaaaataacattgtccttagatgctggctagacattgaattttggtcacctgacgtcatgatctAAATCTAATCTTATAATaatatcttatgatgttgtgtgcctgctgggacttTTCCAAACCAAAATATTGGTCCCTGAAACACACATGCAACCTTTTAAAATAGATACTGGGTAGTTTGCTTAGAAAATATAGTTCTTACTTAAAAATTCTGTGATAAAAATGTCAGAAGGATGCATCATAATTATTTTACATGGTATTCACATGGCCATTTTGAATATTCAAAGCTAAACAATATGACATACTGTACTTTTTTAGAAAGGTCAATTTAAGTGTAATCTtatgtaaatttaaaaacaattacaaatacaaaattttacaccGTAAGAAACCCAGAGGTTTTCTGCTAAAAAAGGTCCAtagtttaaaaggatagttcacaaaCTGAAACTGAAACGCCTGCTTTGACCAcgataattcattagtatggtgtaggtCCTGCACATTGGCCAGAGGGATTTAGAGCCATTCTTCTAGCAGACTAGTAGCCAGGTCACTACATAATGATGGTGGAGGAAAACGTTTCTTGACTCACTCCCTCAAAACACCCCAAATTGGCTCAATAATATCTAGGTCTCGTAACCGTGCAGGCCATTCACTTTCATGTTGATCAAACCACTATGTCGCCAGTCTTGCTGTGTGAACTgttgcattatcatcctgatacatggcACTGCCTTCAGCATATAATATTTATACTATTGGGTGCACTTGGTCCTCTAGAATGATTTGGTAGTCTTTGACACGCCCATTTAGCAATAGTATTGTGTCTAGGAAATGTTATGATATTGCAGTCCCAACATCACTtatccacccccatgcttcactctgggcatgcaacagtcgGGGTGGTAGACTTCTTttgggcttctccacaccgtaactctcccggaTGGGGGAAGAACAGttaaggtggactcatcagagaacaatacatggttctgattgtccacagcccaagattttcgcTGCTGGCACCACTGAGACCAACATTTGGCATTGGCATGAGTGACCAAAGATTACTTCAAAGGCCtggccatgtatattgaccctgaGGAGCTCAGATTGAACAGTATTGGTGGACACAAGAGTGTCTTattgttttatgtgtttttttttggagACGCGTTAGCTCTCTGGAATGTCAGTCAATGAGGATTGGCCACAAGGCTGGTCGAATTTAaccatgaaacctccaacactaaaattggccagtgtttcagtgTCATGGTCAAAcacctgtatgtgtgtatgtgtatatacattaatattattattttacttttttgctaAATGGAAATCTATAGGGTTTAATGTAGGTTTATGGCCGACTAAGGctggacaaaaaatatatatgtacacaaaACGTCGAagaggtttggaatgacatgacaATTTTCATCTTTTTGGTTGAGCTGTCCCTTTAACTTCTATGATTGTGAAATGTATTGTACATGTAGCCAGATTGTTCAAGCCTTCTTGACTCTCAGCTCAGACTTTCTACAGACTCTCTCCAGACTCAGGTTCCACCATATACAGTGTTTTCACATTGTTCGGACTACGTTCGCGCAGTTGTGCACAAAAGCCTGTATGTTCTCTGCTAAGTACCCCACGAGAAGTTGTGTGTTTTTCTGGCCTTGTATTTTCAATTCACTTTTGcagtgattttctttttaaaagttggtttaaaaaagcatttaagtGACTGAATCAGTGTAAAGACGGGGGACGGTTGAACTGCTGACATCACaggcatcttttaaactttgtttCATGCACATAATCAGaacaaaataagactttttttttaaatatatcacaCACACGAGAGAATTCATACACCATATACACACATTCCCTCAAGACTGGCCTTTTTTTATAATCCGGTTTGACATCTGTGTGACGTTCACATTTAAATCTGGTGTTTGTTATCTGATAATTCATACACCGAGGGTTCATATCACTATGGCATCGTCACACTTTATTCTCatctttctgttttatttccagCGTGCATTTCTGTATGAGGGATACAAAAAAACTCTTTTAGTTTTCGTGTTTTATCATCATGTAATATAAGAAAAAAGATGGAAGTGATCTTTTGAATGGacatgattaaatgtttttactatatacttttatacattattttcttATCAGACTAGTAATGAGtatttttatatgtttgtaagtgaagaaaaaaaaatgcttttgcgGCACAactgtgtatatgtaaagaggAGTATTTAATTATCTCAGTTTGTTTTTAACTGAAAAAGGTCAATGTATGTGGAACTGTGGCTTTTTTGGTGAACTGAAGCAGATAAACCACCCAACTAGCTGTCCACCTCATAGTGTATAACGTAGAATAAGTCCATGAACTCAGGTTCATATCCTACACAAAACCTTGTTCGTTATACCAGTGAACGGCAAAATGGCTAAAGATGAAAGCGAGTAAGAACAGAAGTGCATGGCTCTTCCTCGTCCCAGAGTCTGTGTACATCCAAACCAtactgtgttttatttgtttaacacaTCTTTCCTTCCCTTTGTATAGCCTTTGGTGCTATAATAAATTCTATGATTTATCTGTGATACATTATTTTTGCTTTTCCTTCCTGAGGAAACATAAAATGCGAAATGTTCAC
>TCONS_00066057
GGCTCATCTAATAATACACACCTCTCGgatgttttttaaatgaagtcACTTCTTTCCGATTTGCCGCGCTGCTGAAAACACAGCTCTGCACTGGTTGGAGTATAGCAGTTTGCAGAAGTGTCATACTTCGTCACTGACTATGACCCCACGATTGAAGACTCGTACACAAAGCAGTGTGTGATTGACGAGAGGCCTGCACGGCTGGATATCCTGGATACAGCAGGACAGGAAGAGTTCGGAGCCATGAGAGAACAATACATGAGGACAGGGGAGG

Function

symbol description
rras2 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including adaxial cell; head mesenchyme; hindbrain neural plate; musculature system; and notochord. Human ortholog(s) of this gene implicated in Noonan syndrome 12. Orthologous to human RRAS2 (RAS related 2).

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04014 Ras signaling pathway
ko04371 Apelin signaling pathway
ko04072 Phospholipase D signaling pathway
ko04024 cAMP signaling pathway
ko04140 Autophagy - animal
ko04137 Mitophagy - animal
ko04218 Cellular senescence
ko04810 Regulation of actin cytoskeleton
ko04625 C-type lectin receptor signaling pathway
ko05205 Proteoglycans in cancer
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-050417-352 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including adaxial cell; head mesenchyme; hindbrain neural plate; musculature system; and notochord. Human ortholog(s) of this gene implicated in Noonan syndrome 12. Orthologous to human RRAS2 (RAS related 2).

Ensembl:

ensembl_id ENSDARG00000036252

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066056 False 4712 mRNA 0.40 6 27834130 27887883
TCONS_00066057 True 274 processed_transcript 0.48 3 27848010 27879593

Neighbor

gene id symbol gene type direction distance location
XLOC_033764 NA coding upstream 1807 27822444 ~ 27832323 (+)
XLOC_033765 BX005056.3 coding upstream 8069 27825945 ~ 27826061 (+)
XLOC_033763 copb1 coding upstream 13154 27802480 ~ 27820976 (+)
XLOC_033762 BX005056.2 coding upstream 35095 27797821 ~ 27799035 (+)
XLOC_033761 cyp2r1 coding upstream 136896 27455321 ~ 27697234 (+)
XLOC_033767 tub coding downstream 10208 27898091 ~ 28189681 (+)
XLOC_033768 BX005056.1 coding downstream 25055 27912938 ~ 27913055 (+)
XLOC_033769 BX072554.2 coding downstream 365761 28253644 ~ 28258626 (+)
XLOC_033770 BX323591.1 coding downstream 573580 28461463 ~ 28461578 (+)
XLOC_033771 slc7a6os coding downstream 724788 28612671 ~ 28623292 (+)
XLOC_033758 NA non-coding upstream 785673 27044529 ~ 27048457 (+)
XLOC_033757 BX927397.1 non-coding upstream 790288 27043715 ~ 27043842 (+)
XLOC_033780 NA non-coding downstream 1174292 29062175 ~ 29064397 (+)
XLOC_033790 NA non-coding downstream 1390684 29278567 ~ 29280954 (+)

Expression


Co-expression Network