Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00066057 |
| length | 274 |
| RNA type | processed_transcript |
| GC content | 0.48 |
| exon number | 3 |
| gene id | XLOC_033766 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 27834130 ~ 27887883 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007265 | Ras protein signal transduction | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0019003 | GDP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ko04010 | MAPK signaling pathway |
| ko04014 | Ras signaling pathway |
| ko04371 | Apelin signaling pathway |
| ko04072 | Phospholipase D signaling pathway |
| ko04024 | cAMP signaling pathway |
| ko04140 | Autophagy - animal |
| ko04137 | Mitophagy - animal |
| ko04218 | Cellular senescence |
| ko04810 | Regulation of actin cytoskeleton |
| ko04625 | C-type lectin receptor signaling pathway |
| ko05205 | Proteoglycans in cancer |
| ko04147 | Exosome |
| ko04031 | GTP-binding proteins |
| id | description |
|---|---|
| ZDB-GENE-050417-352 | Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including adaxial cell; head mesenchyme; hindbrain neural plate; musculature system; and notochord. Human ortholog(s) of this gene implicated in Noonan syndrome 12. Orthologous to human RRAS2 (RAS related 2). |
| ensembl_id | ENSDART00000173573 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00068858 | lncRNA | upstream | 15687 | 27822444 ~ 27832323 (+) | False | XLOC_033764 |
| TCONS_00068859 | lncRNA | upstream | 15687 | 27823531 ~ 27832323 (+) | False | XLOC_033764 |
| TCONS_00068860 | lncRNA | upstream | 15687 | 27825631 ~ 27832323 (+) | False | XLOC_033764 |
| TCONS_00068861 | lncRNA | upstream | 15687 | 27828012 ~ 27832323 (+) | True | XLOC_033764 |
| TCONS_00066053 | lncRNA | upstream | 48975 | 27797821 ~ 27799035 (+) | True | XLOC_033762 |
| TCONS_00068575 | lncRNA | downstream | 178609 | 28058202 ~ 28089017 (+) | False | XLOC_033767 |
| TCONS_00066064 | lncRNA | downstream | 178609 | 28058202 ~ 28189681 (+) | True | XLOC_033767 |
| TCONS_00068576 | lncRNA | downstream | 1182582 | 29062175 ~ 29064397 (+) | True | XLOC_033780 |
| TCONS_00066088 | lncRNA | downstream | 1205969 | 29085562 ~ 29090937 (+) | True | XLOC_033782 |
| TCONS_00066099 | lncRNA | downstream | 1302483 | 29182076 ~ 29182727 (+) | True | XLOC_033789 |
| TCONS_00066054 | mRNA | upstream | 27034 | 27802480 ~ 27820976 (+) | True | XLOC_033763 |
| TCONS_00066052 | mRNA | upstream | 150776 | 27691647 ~ 27697234 (+) | True | XLOC_033761 |
| TCONS_00066051 | mRNA | upstream | 152337 | 27603211 ~ 27695673 (+) | False | XLOC_033761 |
| TCONS_00066049 | mRNA | upstream | 152397 | 27455321 ~ 27695613 (+) | False | XLOC_033761 |
| TCONS_00066046 | mRNA | upstream | 398628 | 27317174 ~ 27449382 (+) | False | XLOC_033760 |
| TCONS_00066058 | mRNA | downstream | 18498 | 27898091 ~ 28058520 (+) | False | XLOC_033767 |
| TCONS_00066059 | mRNA | downstream | 18615 | 27898208 ~ 28035074 (+) | False | XLOC_033767 |
| TCONS_00066061 | mRNA | downstream | 96855 | 27976448 ~ 28058520 (+) | False | XLOC_033767 |
| TCONS_00066062 | mRNA | downstream | 97472 | 27977065 ~ 28047220 (+) | False | XLOC_033767 |
| TCONS_00066063 | mRNA | downstream | 126503 | 28006096 ~ 28027498 (+) | False | XLOC_033767 |
| TCONS_00066055 | other | upstream | 21949 | 27825945 ~ 27826061 (+) | True | XLOC_033765 |
| TCONS_00066050 | other | upstream | 187282 | 27455340 ~ 27660728 (+) | False | XLOC_033761 |
| TCONS_00066036 | other | upstream | 711364 | 27059394 ~ 27136646 (+) | False | XLOC_033759 |
| TCONS_00066032 | other | upstream | 804007 | 27041364 ~ 27044003 (+) | False | XLOC_033756 |
| TCONS_00066034 | other | upstream | 804168 | 27043715 ~ 27043842 (+) | True | XLOC_033757 |
| TCONS_00066060 | other | downstream | 33345 | 27912938 ~ 27913055 (+) | True | XLOC_033768 |
| TCONS_00066065 | other | downstream | 374051 | 28253644 ~ 28255177 (+) | False | XLOC_033769 |
| TCONS_00066066 | other | downstream | 375503 | 28255096 ~ 28258626 (+) | True | XLOC_033769 |
| TCONS_00066067 | other | downstream | 581870 | 28461463 ~ 28461578 (+) | True | XLOC_033770 |
| TCONS_00066070 | other | downstream | 845317 | 28724910 ~ 28733520 (+) | False | XLOC_033772 |
