RNA id: TCONS_00066032


Basic Information

Item Value
RNA id TCONS_00066032
length 525
RNA type nonsense_mediated_decay
GC content 0.50
exon number 6
gene id XLOC_033756
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 27041315 ~ 27044013 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACCGCCATCATGGGTCGTATGCATGCTCCtggcaAGGGCTTGTCCCAGTCGGCACTGCCCTATAGGCGAAGTGTCCCCACAtgGCTCAAATTGACATCTGATGATGTTAAAGAGCAAATCTTTAAACTGGCCAAGAAGGGTCTGACCCCCTCTCAGATCGGTGTGATCCTGAGGGATTCCCATGGTGTTGCTCAGGTGCGTTTCGTCACTGGCAACAAAATCCTTAGGATCCTAAAGTCCAAAGGCCTGGCCCCCGACCTGCCTGAGGATCTCTACCACCTCATCAAGAAGGCTGTCGCTGTGAGGAAGCACTTGGAGAGGAACAGAAAGTTTGTCTTGTGTTTTCACAGGACAAGGATGCCAAGTTCCGCCTGATTCTGGTTGAGAGCAGAATCCACAGGCTTGCCCGCTACTACAAGACCAGGAGAGTACTTGCCCCCAACTGGAAGTACGAATCCTCCACAGCTTCTGCATTGGTGGCATAAATTTGCAGTTTTTGGAGAAATAAAGATATTTGGATCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0005730 nucleolus cellular_component
GO:0003735 structural constituent of ribosome molecular_function
GO:0070181 small ribosomal subunit rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040625-52 Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleolus. Orthologous to human RPS13 (ribosomal protein S13).

Ensembl:

ensembl_id ENSDART00000132683

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066027 lncRNA upstream 165050 26859488 ~ 26876314 (+) False XLOC_033754
TCONS_00066022 lncRNA upstream 285182 26750471 ~ 26756182 (+) True XLOC_033752
TCONS_00066014 lncRNA upstream 425194 26611727 ~ 26616170 (+) True XLOC_033748
TCONS_00066013 lncRNA upstream 482958 26557767 ~ 26558406 (+) True XLOC_033747
TCONS_00066008 lncRNA upstream 505722 26534131 ~ 26535642 (+) False XLOC_033746
TCONS_00068855 lncRNA downstream 526 27044529 ~ 27048457 (+) True XLOC_033758
TCONS_00066047 lncRNA downstream 328430 27372433 ~ 27424587 (+) False XLOC_033760
TCONS_00066048 lncRNA downstream 400746 27444749 ~ 27449362 (+) True XLOC_033760
TCONS_00068856 lncRNA downstream 411324 27455327 ~ 27564988 (+) False XLOC_033761
TCONS_00068857 lncRNA downstream 411331 27455334 ~ 27603243 (+) False XLOC_033761
TCONS_00066029 mRNA upstream 20061 26998169 ~ 27021303 (+) False XLOC_033755
TCONS_00066030 mRNA upstream 22872 26998210 ~ 27018492 (+) True XLOC_033755
TCONS_00066026 mRNA upstream 148751 26844261 ~ 26892613 (+) False XLOC_033754
TCONS_00066023 mRNA upstream 204082 26762717 ~ 26837282 (+) False XLOC_033753
TCONS_00066025 mRNA upstream 204182 26762990 ~ 26837182 (+) True XLOC_033753
TCONS_00066035 mRNA downstream 15327 27059330 ~ 27231592 (+) False XLOC_033759
TCONS_00066037 mRNA downstream 176652 27220655 ~ 27230994 (+) False XLOC_033759
TCONS_00066038 mRNA downstream 176655 27220658 ~ 27221969 (+) True XLOC_033759
TCONS_00066039 mRNA downstream 206009 27250012 ~ 27449382 (+) False XLOC_033760
TCONS_00066040 mRNA downstream 206183 27250186 ~ 27452674 (+) False XLOC_033760
TCONS_00066028 other upstream 149222 26888410 ~ 26892142 (+) True XLOC_033754
TCONS_00065996 other upstream 920628 26120631 ~ 26120736 (+) True XLOC_033735
TCONS_00065993 other upstream 969856 26071426 ~ 26071508 (+) True XLOC_033733
TCONS_00065992 other upstream 970357 26070874 ~ 26071007 (+) True XLOC_033732
TCONS_00065985 other upstream 1012591 26028659 ~ 26028773 (+) True XLOC_033727
TCONS_00066036 other downstream 15391 27059394 ~ 27136646 (+) False XLOC_033759
TCONS_00066050 other downstream 411337 27455340 ~ 27660728 (+) False XLOC_033761
TCONS_00066055 other downstream 781942 27825945 ~ 27826061 (+) True XLOC_033765
TCONS_00066057 other downstream 804007 27848010 ~ 27879593 (+) True XLOC_033766
TCONS_00066060 other downstream 868935 27912938 ~ 27913055 (+) True XLOC_033768

Expression Profile

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