RNA id: TCONS_00066035


Basic Information

Item Value
RNA id TCONS_00066035
length 4489
RNA type mRNA
GC content 0.52
exon number 27
gene id XLOC_033759
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 27059330 ~ 27231592 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGCTCCGCTCGGGCGGGACACACTACCTGATCACTGGTCCTACGGAGTGTGCAGGGATGGCAGGGTGTTTTTCATCAACGACAAAACTCGCGACACTACTTGGCTCCATCCCCGCACTGGCGAGCCTGTCAACTCAGGACACATGATACGATCAGATTTACCGCGGGGATGGGAAGAGGGCTTCACCGAGGAAGGCGCCAGCTACTTCATAAACCACAACCAGAGGTCGACTACGTTCAGGCATCCTGTGACGGGACATATCTCCTCAGAAAACACTGACTTCATTTTACAGGACCAGGCAAATTTACGCATGTCCAAGCCACCACCAGAAGCGAGACCTCCCAGCATGGTCAGCGAGTCCTCTGTGGCCATTTCCTCATCCCCTGCGGACGCCACCTCAGGATCCAGGAATCTGAAACCCAGTGGGAAGGTGCATTGCTTTGGCAAGCGTGACCATTCCATCAAAAGGAACCCCAATGTCCCGGTGGTGGTGAGAGGATGGCTCTACAAACAGGACAGCTCAGGCATGAGACTGTGGAAGAGGAAATGGTTTGTGTTGTCTGATTACTGCTTGTTTTATTATAAAGATAGTCGAGAGGAGACTGTTTTGGGCAGTATACCTCTGCCCAGCTATGTAATTTCTCCCGTGGGACCCGAGGATCACATCAGCCGCAAGTATGCCTTCAAGGCCTGCCACACGGGAATGCGCTCCTACATTTACAATAAGAATTCTCTGATTGGCTCGCAGGCCGAGCACTGTGGCATGAGGACTTACTTCTTCAGCGCCGACACACAAGAGGACATGAATGGCTGGATCCGGGCCATGAACCAGGCTGCGCTGATGCAGAGCCATGGCATGAAGAGAGAAGCTGAAAGAAGCTCCAAACCTGAGCAGCATGCCGTCCCACAGACCAACCATTTCAGCAGCATCAAAGGCTCATCCCAGGCAGAGAGCGCCCAGCAAACACATATAGAGGTGGCGGAGCTGAGACCGCAGCGAGATGGAGACGAGTGTTACGTTTACAGCAAGGATATAACCGAGGATCCTGTTAAACTCATGTCCCCTGGAGAAATGGAGATGGAGGCGCTTTCCCAATCAGGTGCTCATTCACGGCCTCCGTCCACGGTGCCCACTCAAAGGAACGGACTGCCCTCTTCAGGCATTCCTCCTGATCAGAACGGCAACGTAGTGTATAAGAGAGGTCTCGTCCCACGTACAGACACTGAGAAAAAGGTACAGAGAAAAACTGCGCTTGCTCAGGTCGAGCACTGGGTGAAAGTACAGAAAGGAGACCCCAAAAGCCATCCCACTGCTGAGTACACTCTACCCAGACGGACGCCTCCACTCCAGCCCAAGTCCGTCATGATGGACACATACCAGTCGTTGCCAAAGACCACGCGCCACCACTCCGGAAGCAGTTCTCCCCCTGTGCCGCGCAACCTGCCCAGTGACTATAAGTACGCCCATGACCGTCTTAGTCACTTCCGCATGTCCACCGATGAGCGCATGGCCACTAAAGAGGGCATGGTGTGGCAGCTATATGAGTGGCAACAGCGGCAACAGTTCCGCCACGGAAGCCCGACAGCGCCCATCTACACCGGGCCTGATTACATGGACACCTCCGCCTTTAGGGTCACTCTGGAAATGCCACGATCCATATCCGTGCCCCCATCGCCATGTGACATGCCTCCATCAGGGCACCCCTCGAAATCCCTTTCCCCACGCAGGCCTCATACGCCCGCAGACAGGGTGACGGTACGCCCGCTGGACGACTTTGCCACCGTGGATACACCCATTTTGGGTTCTCCCAGAGGAATATGTTCCCAGATCTCAAAGACCTCACAACTAGAAAGGAGATCCATGCCAACAATGGGCTAcatcacacacacagtcagcgCTCCAAGTCTGCATGGAAAAACGGCAGATGACACTTACATCCAGCTGAAGAAGGACCTGGAGTATCTAGACCTGAAGGTAACCGGACGTGACTCGCTTAAAGATCGACCGCCTCGGCCTGTTAAAATTGCAGAAAGTGACATAGACGTAAAGCTAAGTAGGTTATGCGAACAAGACAAGATCCTACAGGAGCTGGAGGCCAGGATACGCACACTCAAAGAAGATAAGGACAAGCTGGAGTCAGTTCTGGATGTTTCTCATCAGCAGATGGAGCAGTACCAGGACCAGCCTGCCCATGCAGAGAAGATTGCCTACCAACAGAAGCTGTTACGAGAGGATGTGGTCCACATCAGGGCAGACATCTCACAGGTGTCCACGGAAATGGAGAATGCCTGGTCAGAGTACAGCCACTTGGAGAGAGATGTAGACAGACTGCGTTCAGCCCTTCAAGACCAGATGACCCACAGTGCTCTCTCTCAGcagGAGAAATCTCAAATGAGGAAGGAACTGTGGCGGATCGAAGATGTGCTCGCAGGCCTGAGCTCAAGCAAAGCAAACTACAGAGTGATCATTGACTCAGTGCGTAATCCAGGTGAGAGCGGCCCCCTTCCTGCCATCACCCCCATGCACTGGAACACAGCCAGAGAGAGGAAACTCGTGCCTTCAGCGTCATTGTCCGCAGTGccttcgctctccgacagcccgTCCATGGGGGAACTAAAAGCTGCTCAACCCAGCCCACATCTCAGCCCTGTGCAGCCATGTACCCAACAGCCTCTGCAACTCTCGCACACAGCCCTCAAGCCAAAATGGCCTGAAGAAGATGCTCCTCCCAGACCGCCTCTCCCTCACCTCTACAGCCCAGACGAACACCCTCCAGCTGTGCCCCCTCTGCCCAAAGAGACCTCTGTCATCCGACACACTTCAGTTCGGGGTCTGAAACGGCAGTCTGATGAGCGCAAGCGCGATCGTGAAATCGGACAGTTCTCTAACGGAGATCACAAGGTTGAGATACGGGCATTCCTCAGCGAGCCTGAACTGCTGGTGGTCGGTGGACAGATTGGGAGCTTGAGCCGTGATAGTGGCTACCAAACTCTACCAAACAGAGGTTTGACAAGCTCCTCTTCAAGACTGAACCAGTCATCAAACATTTCATCATTTGTCACCCTCAGAAGAGGACTCACCACCACAAGCTTGAAGGAGAGACCAAAGAGTGCCTTGGAGCGTCTTTACTCCGGAGAGCCTGTGCAGCAGCGCGGACGCATGAGCGCAGAAGAGCAGCTGGAGAGGATGAAGCGCCACCAAAAGGCTCTGGTACGAGAGCGCAAGAGAACCCTCAGCCAGGGCGAGCGGCAGGCCTCCACGTCTCGCGCTTCTTCCTCCTCCACCTCCAGACCCGTCTCTGCAGACCTGGGATCATGGAGAAGAGAGCAGGACTTTGATTTGCAGCTTTTGGAGCGAGCTGTGCAGGGTGAGGAGAGACCAGTGGAGCACAAAGAAAGACAGCGCTCTCATTCAGATGAATGGCTCACCCTGAGCAGCACACCCATGAGAGAGCTGGATCTAGAGCCTCTGGACTACCAGCTTGACCTCAGCAAAGAGCTGTCAAAGCCACAGAAGGTCACCATCCCTGAGCGCTATGTAGACATGGATCCAGAGGAGCCCCTTAGTCCTCAGGAGATGGAGGCCCGACATCGAAAAGTGGAACGAATCAAGAGCATCCTGGCTAAATCTAGtgTTCAGAATATACCTCCTCCAGCAGCAGTAGACAAGCCGGTAGTGCCGGATATAGATTCAGCTCTACAGGAGCAGGAGAGAATCATCACCATGTCCTATGCCTTAGCATCAGAGGCCTCGCTCAAGAGCAAACAAGTGGCAGCCAAAGCTGTGTCTGGATATTGAGGTGCTGTCACTTTCTGAAAACCGCACTAGTGGTGGACAAACTTAAACTCTGCTTATCCGATCACATCGCTCACATTTAGAGATGACCTATAGCGCACTTTCGGACTCACATGGGAACTCACTCctgaaatgcatttgtttttgtaGAGCTATCATTTGATATGGACTTGTTGCTGTGGAAACTGCTGTGCGTATGCTGTACAAAGTCTAACCATGATAACCCAGACATACAGTAGAGAGCCATTTTATATCCATTCTTGCACTTTTAATATGCACCGTATTGTAGAGAACAATGGAAGCTCACATTTTACATCTCTAGACAAGAAGTTTGGAGTTCAGTTGGAAACTTTAACGGTAACATAATGACTAAATAAAGTATTATTCGTGTGACGcgtcatatacagtacatgaagGGTACAAATATATGTCggatattattgtattttgtcaATTCAGATGATATTCTTACACCAAATCacttgaaatattatttttatgtatccAGCACTGCCAGTTTCCAGTTAGCTTgccaaatgcattttatttttgttgataaATTTAGGGTGGGGGGTTTGGGGGGATAACGTTAATATTTTCAAACAGGATTTGTTGGGGAATGGGTCGGGGAGGGAtatggcactttttttttttaaagaaactgtaaatattaaagatattaacaagc

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091014-2 Orthologous to human PLEKHA7 (pleckstrin homology domain containing A7).

Ensembl:

ensembl_id ENSDART00000173919

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068855 lncRNA upstream 10873 27044529 ~ 27048457 (+) True XLOC_033758
TCONS_00066033 lncRNA upstream 15330 27041373 ~ 27044000 (+) True XLOC_033756
TCONS_00066027 lncRNA upstream 183016 26859488 ~ 26876314 (+) False XLOC_033754
TCONS_00066022 lncRNA upstream 303148 26750471 ~ 26756182 (+) True XLOC_033752
TCONS_00066014 lncRNA upstream 443160 26611727 ~ 26616170 (+) True XLOC_033748
TCONS_00066047 lncRNA downstream 140841 27372433 ~ 27424587 (+) False XLOC_033760
TCONS_00066048 lncRNA downstream 213157 27444749 ~ 27449362 (+) True XLOC_033760
TCONS_00068856 lncRNA downstream 223735 27455327 ~ 27564988 (+) False XLOC_033761
TCONS_00068857 lncRNA downstream 223742 27455334 ~ 27603243 (+) False XLOC_033761
TCONS_00066053 lncRNA downstream 566229 27797821 ~ 27799035 (+) True XLOC_033762
TCONS_00066031 mRNA upstream 15317 27041315 ~ 27044013 (+) False XLOC_033756
TCONS_00066029 mRNA upstream 38027 26998169 ~ 27021303 (+) False XLOC_033755
TCONS_00066030 mRNA upstream 40838 26998210 ~ 27018492 (+) True XLOC_033755
TCONS_00066026 mRNA upstream 166717 26844261 ~ 26892613 (+) False XLOC_033754
TCONS_00066023 mRNA upstream 222048 26762717 ~ 26837282 (+) False XLOC_033753
TCONS_00066039 mRNA downstream 18420 27250012 ~ 27449382 (+) False XLOC_033760
TCONS_00066040 mRNA downstream 18594 27250186 ~ 27452674 (+) False XLOC_033760
TCONS_00066041 mRNA downstream 19784 27251376 ~ 27327556 (+) False XLOC_033760
TCONS_00066042 mRNA downstream 19883 27251475 ~ 27454645 (+) False XLOC_033760
TCONS_00066043 mRNA downstream 21471 27253063 ~ 27449382 (+) False XLOC_033760
TCONS_00066032 other upstream 15327 27041364 ~ 27044003 (+) False XLOC_033756
TCONS_00066034 other upstream 15488 27043715 ~ 27043842 (+) True XLOC_033757
TCONS_00066028 other upstream 167188 26888410 ~ 26892142 (+) True XLOC_033754
TCONS_00065996 other upstream 938594 26120631 ~ 26120736 (+) True XLOC_033735
TCONS_00065993 other upstream 987822 26071426 ~ 26071508 (+) True XLOC_033733
TCONS_00066050 other downstream 223748 27455340 ~ 27660728 (+) False XLOC_033761
TCONS_00066055 other downstream 594353 27825945 ~ 27826061 (+) True XLOC_033765
TCONS_00066057 other downstream 616418 27848010 ~ 27879593 (+) True XLOC_033766
TCONS_00066060 other downstream 681346 27912938 ~ 27913055 (+) True XLOC_033768
TCONS_00066065 other downstream 1022052 28253644 ~ 28255177 (+) False XLOC_033769

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_03037832_03085312.mRNA False 3676 mRNA 0.53 25 CI01000026 3037832 ~ 3085526 (+)