Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00066041 |
| length | 749 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 5 |
| gene id | XLOC_033760 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 27250012 ~ 27454645 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042694 | muscle cell fate specification | biological_process |
| GO:0060612 | adipose tissue development | biological_process |
| GO:0032332 | positive regulation of chondrocyte differentiation | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007519 | skeletal muscle tissue development | biological_process |
| GO:0045165 | cell fate commitment | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0007417 | central nervous system development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-081120-6 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within adipose tissue development; muscle cell fate specification; and skeletal muscle tissue development. Predicted to be active in nucleus. Is expressed in fast muscle cell; myotome; pharyngeal arch 3-7; and somite. Human ortholog(s) of this gene implicated in high grade glioma. Orthologous to human SOX6 (SRY-box transcription factor 6). |
| ensembl_id | ENSDART00000173521 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00068855 | lncRNA | upstream | 202919 | 27044529 ~ 27048457 (+) | True | XLOC_033758 |
| TCONS_00066033 | lncRNA | upstream | 207376 | 27041373 ~ 27044000 (+) | True | XLOC_033756 |
| TCONS_00066027 | lncRNA | upstream | 375062 | 26859488 ~ 26876314 (+) | False | XLOC_033754 |
| TCONS_00066022 | lncRNA | upstream | 495194 | 26750471 ~ 26756182 (+) | True | XLOC_033752 |
| TCONS_00066014 | lncRNA | upstream | 635206 | 26611727 ~ 26616170 (+) | True | XLOC_033748 |
| TCONS_00066047 | lncRNA | downstream | 44877 | 27372433 ~ 27424587 (+) | False | XLOC_033760 |
| TCONS_00066048 | lncRNA | downstream | 117193 | 27444749 ~ 27449362 (+) | True | XLOC_033760 |
| TCONS_00068856 | lncRNA | downstream | 127771 | 27455327 ~ 27564988 (+) | False | XLOC_033761 |
| TCONS_00068857 | lncRNA | downstream | 127778 | 27455334 ~ 27603243 (+) | False | XLOC_033761 |
| TCONS_00066053 | lncRNA | downstream | 470265 | 27797821 ~ 27799035 (+) | True | XLOC_033762 |
| TCONS_00066035 | mRNA | upstream | 19784 | 27059330 ~ 27231592 (+) | False | XLOC_033759 |
| TCONS_00066037 | mRNA | upstream | 20382 | 27220655 ~ 27230994 (+) | False | XLOC_033759 |
| TCONS_00066038 | mRNA | upstream | 29407 | 27220658 ~ 27221969 (+) | True | XLOC_033759 |
| TCONS_00066031 | mRNA | upstream | 207363 | 27041315 ~ 27044013 (+) | False | XLOC_033756 |
| TCONS_00066029 | mRNA | upstream | 230073 | 26998169 ~ 27021303 (+) | False | XLOC_033755 |
| TCONS_00066049 | mRNA | downstream | 127765 | 27455321 ~ 27695613 (+) | False | XLOC_033761 |
| TCONS_00066051 | mRNA | downstream | 275655 | 27603211 ~ 27695673 (+) | False | XLOC_033761 |
| TCONS_00066052 | mRNA | downstream | 364091 | 27691647 ~ 27697234 (+) | True | XLOC_033761 |
| TCONS_00066054 | mRNA | downstream | 474924 | 27802480 ~ 27820976 (+) | True | XLOC_033763 |
| TCONS_00066056 | mRNA | downstream | 506574 | 27834130 ~ 27887883 (+) | False | XLOC_033766 |
| TCONS_00066036 | other | upstream | 114730 | 27059394 ~ 27136646 (+) | False | XLOC_033759 |
| TCONS_00066032 | other | upstream | 207373 | 27041364 ~ 27044003 (+) | False | XLOC_033756 |
| TCONS_00066034 | other | upstream | 207534 | 27043715 ~ 27043842 (+) | True | XLOC_033757 |
| TCONS_00066028 | other | upstream | 359234 | 26888410 ~ 26892142 (+) | True | XLOC_033754 |
| TCONS_00065996 | other | upstream | 1130640 | 26120631 ~ 26120736 (+) | True | XLOC_033735 |
| TCONS_00066050 | other | downstream | 127784 | 27455340 ~ 27660728 (+) | False | XLOC_033761 |
| TCONS_00066055 | other | downstream | 498389 | 27825945 ~ 27826061 (+) | True | XLOC_033765 |
| TCONS_00066057 | other | downstream | 520454 | 27848010 ~ 27879593 (+) | True | XLOC_033766 |
| TCONS_00066060 | other | downstream | 585382 | 27912938 ~ 27913055 (+) | True | XLOC_033768 |
| TCONS_00066065 | other | downstream | 926088 | 28253644 ~ 28255177 (+) | False | XLOC_033769 |
