RNA id: TCONS_00066036



Basic Information


Item Value
RNA id TCONS_00066036
length 962
RNA type processed_transcript
GC content 0.43
exon number 5
gene id XLOC_033759
representative False

Chromosome Information


Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 27059330 ~ 27231592 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GCAGGGTGTTTTTCATCAACGACAAAACTCGCGACACTACTTGGCTCCATCCCCGCACTGGCGAGCCTGTCAACTCAGGACACATGATACGATCAGATTTACCGCGGGGATGGGAAGAGGGCTTCACCGAGGAAGGCGCCAGCTACTTCATAAACCACAACCAGAGGTCGACTACGTTCAGGCATCCTGTGACGGGACATATCTCCTCAGAAAACACTGACTTCATTTTACAGGACCACATGTTTAGGAAGATCTAAAGGGGCTTTGATGATTAAATGAAGAGCTGCAAGAGTTTTGAATTGGTCTTTAACAGATGTGTGTAAGTAATGGGATATCATATATCACACTGAAATCAAATGCCTGTGCTGGAATCTTCAAGTCAGCTGAATTGTCCAGATATAATGGTAATGAGGGTCATTACTGttattacatttttctgtgtagGTAGTATGGGCATTGTCTAGCTTGCATCTGTGCTGATTTCAATTGACAGTGTCTGATAGTCTGTATTCAGAGTGTTGTGGATGCTGAATTGTATTTACACCACAAACTAGGGTTGTAACTGTATTAGGGCTGGGCGGTATATTGGGTTCTGGGGATATATCGATATTATTCCCCAATGCGATGCGGTATTATCCAATATCGTTCATATCGATATGGTTTGAGTTCACAAGTGCGCATTCTGCATGAAACAGACCACTCCAAGGAAGCATGCGTGCTTCACTTGCACAAATGTGCAAAATGcgcaaatgaatgattcactccatgagtcatacaaaagatttgttttaaatgaacgaatcgttcaagaacgacccatcacttcTGCTTGTGTGCACGCATGTCCGTCAGTGCCTGCAGCTGTCACAGCGGTTTTATCGATCATTTcttccgcaattgacagcaagaacgagcaTAGAAGCAGCACCTGAATATATTCAAAAGAATAAAATGGGATGAAT

Function


GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091014-2 Orthologous to human PLEKHA7 (pleckstrin homology domain containing A7).

Ensembl:

ensembl_id ENSDART00000173829

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00068855 lncRNA upstream 10937 27044529 ~ 27048457 (+) True XLOC_033758
TCONS_00066033 lncRNA upstream 15394 27041373 ~ 27044000 (+) True XLOC_033756
TCONS_00066027 lncRNA upstream 183080 26859488 ~ 26876314 (+) False XLOC_033754
TCONS_00066022 lncRNA upstream 303212 26750471 ~ 26756182 (+) True XLOC_033752
TCONS_00066014 lncRNA upstream 443224 26611727 ~ 26616170 (+) True XLOC_033748
TCONS_00066047 lncRNA downstream 235787 27372433 ~ 27424587 (+) False XLOC_033760
TCONS_00066048 lncRNA downstream 308103 27444749 ~ 27449362 (+) True XLOC_033760
TCONS_00068856 lncRNA downstream 318681 27455327 ~ 27564988 (+) False XLOC_033761
TCONS_00068857 lncRNA downstream 318688 27455334 ~ 27603243 (+) False XLOC_033761
TCONS_00066053 lncRNA downstream 661175 27797821 ~ 27799035 (+) True XLOC_033762
TCONS_00066031 mRNA upstream 15381 27041315 ~ 27044013 (+) False XLOC_033756
TCONS_00066029 mRNA upstream 38091 26998169 ~ 27021303 (+) False XLOC_033755
TCONS_00066030 mRNA upstream 40902 26998210 ~ 27018492 (+) True XLOC_033755
TCONS_00066026 mRNA upstream 166781 26844261 ~ 26892613 (+) False XLOC_033754
TCONS_00066023 mRNA upstream 222112 26762717 ~ 26837282 (+) False XLOC_033753
TCONS_00066037 mRNA downstream 84009 27220655 ~ 27230994 (+) False XLOC_033759
TCONS_00066038 mRNA downstream 84012 27220658 ~ 27221969 (+) True XLOC_033759
TCONS_00066039 mRNA downstream 113366 27250012 ~ 27449382 (+) False XLOC_033760
TCONS_00066040 mRNA downstream 113540 27250186 ~ 27452674 (+) False XLOC_033760
TCONS_00066041 mRNA downstream 114730 27251376 ~ 27327556 (+) False XLOC_033760
TCONS_00066032 other upstream 15391 27041364 ~ 27044003 (+) False XLOC_033756
TCONS_00066034 other upstream 15552 27043715 ~ 27043842 (+) True XLOC_033757
TCONS_00066028 other upstream 167252 26888410 ~ 26892142 (+) True XLOC_033754
TCONS_00065996 other upstream 938658 26120631 ~ 26120736 (+) True XLOC_033735
TCONS_00065993 other upstream 987886 26071426 ~ 26071508 (+) True XLOC_033733
TCONS_00066050 other downstream 318694 27455340 ~ 27660728 (+) False XLOC_033761
TCONS_00066055 other downstream 689299 27825945 ~ 27826061 (+) True XLOC_033765
TCONS_00066057 other downstream 711364 27848010 ~ 27879593 (+) True XLOC_033766
TCONS_00066060 other downstream 776292 27912938 ~ 27913055 (+) True XLOC_033768
TCONS_00066065 other downstream 1116998 28253644 ~ 28255177 (+) False XLOC_033769

Expression Profile


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