RNA id: TCONS_00066054


Basic Information

Item Value
RNA id TCONS_00066054
length 4040
RNA type mRNA
GC content 0.47
exon number 22
gene id XLOC_033763
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 27802480 ~ 27820976 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGGTTCCACGTCATTCGGAAGGATCAGGATCTCGCCAGACACGGATGCAGATACTGGAGAAGAGAGAGATCTGACACCTATTTGAAAGGAAAGCTCGTAGGTATTCTCTCTGAGTGGAGTCTCCCAAAGGGAAGAAGAGCTGACATCATGACAGCCGCAGAGAATGTGTGTTACACTCTCATCAATGTCACCAATGACTCCGAACCACCATCGGAAGTCAGCTTGAAAACTGATTTAGAAAAAGGAGAAATCAAAGCCAAAACGGAGGCTTTGAAGAAGGTCATCATCATGATCCTGAATGGAGAGAAACTGCCAGGTCTTTTGATGACCATCATCCGCTTCGTTCTGCCCCTTCAAGACCACACAATTAAGAAACTACTCTTAGTTTTTTGGGAAATTGTTCCCAAGACCACTCCTGATGGCAAACTTCTTCAGGAGATGATCTTGGTCTGTGATGCCTACAGGAAGGATCTCCAGCATCCCAATGAGTTCATCCGTGGCTCCACACTGCGTTTCTTGTGCAAGCTGAAAGAATCCGAACTGCTGGAACCCCTCATGCCAGCAATCCGTGCCTGTCTAGAGCATCGTCACAGCTACGTACGGCGCAATGCAGTCCTGGCCATCTACACTATCTACAGGAATTTTGAGCATTTGATCCCAGACGCTCCTGAGTTGATTCATGACTTTCTTGTAAACGAAAAAGATGCGAGCTGCAAGAGGAATGCGTTTATGATGCTGATTCACGCAGATCAGGATCGAGCTCTGGACTACCTTAGCACCTGTATTGATCAGGTGCATACTTTCGGAGACATTTTACAGCTGGTGATTGTGGAACTGATTTATAAGgtCTGCCATGCGAACCCCTCAGAGCGAGCTCGTTTCATCCGCTGTATTTACAATCTGCTGCAGTCGTCGAGTCCTGCTGTTAAATATGAAGCAGCTGGAACTCTGGTTACTCTGTCCAGCGCTCCCACCGCCATCAAGgcTGCTGCTCAGTGCTACATTGATCTGATCATTAAAGAGAGCGATAACAACGTTAAACTCATTGTTCTAGACAGGCTGATTGAGTTGAAGGAACACCCGACACACGAGCGTGTACTGCAGGACTTGGTGATGGATATTTTGAGGGTTTTGACCACTCCTGACCTCGAGGTCCGCAAGAAGACTTTACAGTTGGCGTTGGACCTGGTGTCATCCCGCAATGTGGAGGAGCTGGTAATTGTGCTAAAGAAAGAAGTCATCAAAACCAACAATGTGACAGAACACGAAGACACAGACAAGTACAGGCAGCTGCTGGTTCGCACTCTGCACTCATGTAGTGTTCGCTTCCCTGACATGGCAGCCAATGTCATCCCTGTGCTGATGGAGTTCCTGAGTGACACTAATGAAGCGGCTGCTGCTGAtgtgctggagtttgtgcgggaGGCCATTCAGAGGTTTGACAACCTGCGACCCCTCATCATTGAGAAGATGCTGGAGGTCTTCCATGCAATAAAGACAGTCAAGATTTATAGAGGAGCTCTGTGGATTTTGGGTGAATATTGCAGCACTAAAGAGGACATTCAGAGTGTCATGACAGAAGTGCGCAGATCTTTAGGAGAGATTCCAATTGTTGAGAATGAGTTGAAGAAGGAGGCTGGAGAGGTGAAGCCTGAGGAGGAGGTGACCGCAGCTCCAGCTCCTAAACTGGTGACAGAAATGGGCACATACGTAACCCAGAGTGCCCTCAGCACCTCCAGACCATCCAAAAAAGAAGAGGACAGGCCTCCTCTGAGGGGTTTCCTGATGGATGGAGACTTTTATGTTGCTGCCTCACTGGCCACCACCCTCACCAAAGTGGCCCTGCGCTATGTTGCCCTCGCAGAAGACAAAAGAAGACAAAATTCATTCGTAGCAGAGGCCATGCTGATCATGGCCACTGTGCTCCATCTGGGCAAGTCATCTCTACCCAAGAAGCCCATCACTGATGATGATGTGGACCGGATCTCACTGTGTCTCAAGGTCCTGTCCGAGTGCTCGCCTCTTATGAATGACATCTTCAACAAAGAGTGCCGCAGATCCCTGTCCCATATGCTCGCTGTTCGACTGGAGGAGGAGAAACTGTCTCAGAAGAAAGAGTCTGAGAAGCGTAATGTGACGGTTCAGGCCGACGATCCAATCTCCTTTATGCAGTTAACTGCCAAGAATGAGATGGCGTCCAAAGAGGACCAGTTCCAGCTCAGTCTGCTGGCCGCTATGGGCAATACTCAGAGGAAAGAAGCCACAGATCCACTGGCCTCCAAACTTAATAAGGTCACCCAGTTGACTGGTTTCTCAGATCCAGTGTATGCAGAAGCTTATGTCCATGTCAATCAGTATGACATAGTTTTGGATGTCTTGGTTGTTAATCAGACTAGCGACACCCTACAGAACTGCACCTTGGAGCTGGCAACACTTGGTGACCTTAAATTAGTTGAGAAGCCATCTCCTCTTACATTGGCTCCTCACGACTTTGCCAACATTAAAGCCAACGTGAAAGTGGCTTCCACAGAGAACGGCATCATATTCGGAAACATAGTTTATGATGTATCGGGAGCAGCCAGTGACAGAAACTGCGTAGTCCTGAGCGACATTCACATCGACATCATGGACTACATTCAACCGGCCTCCTGCACAGACGCCGAGTTCAGACAGATGTGGGCTGAGTTTGAGTGGGAAAATAAGGTTACCGTCAACACCAACATCACAGATCTGAATGATTATCTCCTGCATATTCTGAAGTCCACCAACATGAAGTGCCTGACCCCAGAGAAGGCCCTGTCTGGCATCTGCGGCTTCATGGCAGCAAATCTGTATGCTCGCTCTATATTTGGAGAAGACGCCCTTGCAAACGTTAGCATCGAAAAGCCGATCCATTTGGGAGTCGATGCACCAGTCAATGGCCATATTCGGATCCGAGCCAAAAGCCAGGGAATGGCTTTGAGTCTGGGTGACAAGATCAACCTTTCTCAGAAGAGAACCGCCTCATAAGGGTCAAAGACTGAGGCCATGGAGGCAAAAAGCAAGATTTGCCTAAAAAGCGCTCTGGTTATTCCTATATCTTGTCTTTTCTCTATTGCTTGTTTGTGTCTCTCTAGACTACCGTACACATTCAGTGCTCTGTGGCCAACATCTAAGCTCTTCAATCCCATAAAAATGTAGAAAGGGgattattttgacattttctaCCAACACCCTTCTTCTTAACTGCTCATAAAGGGATTGTCCCTGTTAATCTGTAATCTGTTTCAATAAACATTGCACaccatatatataaatacacacgccaCGGACGTGTTTTTATTCTCTCGTCAAACGAATAGTGTTTTATTCGCTTGTTAAGCGGATGGTGTTTTTATGAATTGGGTCGCTTGTAAGAAGTGGAGAACAGTCGTGCCCTCAAACCACAGTTGACACAACAAAGGATGTGTTCTCTTGAAGAAAATCTCCTGGAATCTGGAAAATTTTGTTTTGGTCTCCTGCCTCTTAGATGACTTACTCATAAGACTTGTGGTCATAACTTTCATGTCTACATGGTGTATGAGAATATTAAAGATAAAGGCGTCAAGGTCGTGGCTTAGCCCTAATAGAAGTGAGTAAATGCTGTCGTTAAAATAATTTGCTATAAAGGTTTATgggggctgcacggtggtgcagtgggtagcacgtttgcctcacagcaagaaaattgctggttcgagcctgggctgagtgagttggtgtttctgtgagtttgcatgttttcccccatgTTTGCAtcagtttcctccgggtgctccggtttaccaaagacacgtggtacaggtgaattgagttggctaaattgtctgtagtgtatgggtgtgtgtgtatatgagtgtgtatggatgtttcccagtgatggattgcagctagaagagcatctgctgcgtaaaacatatgctggataagatggtggttcattctgctgtgatgaccccagattaataaaaaggactactccgaaaagaaaatgaatgaatgaaaaaaggttTACGAAAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0061053 somite development biological_process
GO:0030903 notochord development biological_process
GO:0030117 membrane coat cellular_component
GO:0030126 COPI vesicle coat cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030219-38 Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Is expressed in axis; brain; neural rod; and notochord. Orthologous to human COPB1 (COPI coat complex subunit beta 1).

Ensembl:

ensembl_id ENSDART00000079042

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066053 lncRNA upstream 3445 27797821 ~ 27799035 (+) True XLOC_033762
TCONS_00068857 lncRNA upstream 199237 27455334 ~ 27603243 (+) False XLOC_033761
TCONS_00068856 lncRNA upstream 237492 27455327 ~ 27564988 (+) False XLOC_033761
TCONS_00066048 lncRNA upstream 353118 27444749 ~ 27449362 (+) True XLOC_033760
TCONS_00066047 lncRNA upstream 377893 27372433 ~ 27424587 (+) False XLOC_033760
TCONS_00068858 lncRNA downstream 1468 27822444 ~ 27832323 (+) False XLOC_033764
TCONS_00068859 lncRNA downstream 2555 27823531 ~ 27832323 (+) False XLOC_033764
TCONS_00068860 lncRNA downstream 4655 27825631 ~ 27832323 (+) False XLOC_033764
TCONS_00068861 lncRNA downstream 7036 27828012 ~ 27832323 (+) True XLOC_033764
TCONS_00068575 lncRNA downstream 237226 28058202 ~ 28089017 (+) False XLOC_033767
TCONS_00066052 mRNA upstream 105246 27691647 ~ 27697234 (+) True XLOC_033761
TCONS_00066051 mRNA upstream 106807 27603211 ~ 27695673 (+) False XLOC_033761
TCONS_00066049 mRNA upstream 106867 27455321 ~ 27695613 (+) False XLOC_033761
TCONS_00066042 mRNA upstream 347835 27251475 ~ 27454645 (+) False XLOC_033760
TCONS_00066040 mRNA upstream 349806 27250186 ~ 27452674 (+) False XLOC_033760
TCONS_00066056 mRNA downstream 13154 27834130 ~ 27887883 (+) False XLOC_033766
TCONS_00066058 mRNA downstream 77115 27898091 ~ 28058520 (+) False XLOC_033767
TCONS_00066059 mRNA downstream 77232 27898208 ~ 28035074 (+) False XLOC_033767
TCONS_00066061 mRNA downstream 155472 27976448 ~ 28058520 (+) False XLOC_033767
TCONS_00066062 mRNA downstream 156089 27977065 ~ 28047220 (+) False XLOC_033767
TCONS_00066050 other upstream 141752 27455340 ~ 27660728 (+) False XLOC_033761
TCONS_00066036 other upstream 665834 27059394 ~ 27136646 (+) False XLOC_033759
TCONS_00066032 other upstream 758477 27041364 ~ 27044003 (+) False XLOC_033756
TCONS_00066034 other upstream 758638 27043715 ~ 27043842 (+) True XLOC_033757
TCONS_00066028 other upstream 910338 26888410 ~ 26892142 (+) True XLOC_033754
TCONS_00066055 other downstream 4969 27825945 ~ 27826061 (+) True XLOC_033765
TCONS_00066057 other downstream 27034 27848010 ~ 27879593 (+) True XLOC_033766
TCONS_00066060 other downstream 91962 27912938 ~ 27913055 (+) True XLOC_033768
TCONS_00066065 other downstream 432668 28253644 ~ 28255177 (+) False XLOC_033769
TCONS_00066066 other downstream 434120 28255096 ~ 28258626 (+) True XLOC_033769

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_03497917_03504607.mRNA True 1893 mRNA 0.50 14 CI01000026 3497917 ~ 3504607 (+)
bowfin (Amia calva) AMCG00007247 True 3553 mRNA 0.47 22 CM030123.1 8603478 ~ 8617299 (-)