RNA id: TCONS_00068861


Basic Information

Item Value
RNA id TCONS_00068861
length 1860
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_033764
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 27822444 ~ 27832323 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAAACGTATACAAGTATGAAAcaacttgagagtgagtaaatggacTGTGGGAGGTGGAACTTTGTCTTCCAGGCGACTGCAGTGGGACCATGTGAACTTTAGAGTTCTGGATTACGAGTTAATTGAAATTCCTCAAATTCTTTTGGGTTGAAGAGAAGGAGTCAAAGGGAATTGATTAATTCTGCTACTCAAAATAATACTGTATCGTTCTGACTGTTTGCATTCGAGGAACTGCTAAAAAGAGTATGCAAACAGTGGCGTGCGAGAAAGGAGAGTTTATGCAAACCACGGCATCCTCCAACAATGGCATTTCTGGAGTTCTGCGGTGTGGAATATGCACCGAATTTACATTTTGCAGCCGATGCTTCCTCGTGTTGTAAACATTCTGTTGCTTCACATTCCCTCTTTGACGAAACCCCCAGAGGTCATAGTGCCAAGTCATGACATGTGGAGGATTGTTGGGGGTTTATTAGGATGGGTCATTGTGTTAAGAAACACTGAGTAAGTAAGTGTCGCTCACTGTTCAGCAGCTGTGGAAATAAACAGCTCCGCTATAGACCCTGGACGTACATGTGGGTGGAAAAAAGTcgttattgttatatatatttcaCACATGCTCAGGTGCTAGTGCTACACTGCTAGTTAGTCAGATTTCCATACAGGGAACAACAAATTTTAAAATGTCTCCTACGGGTTTCCCACAATCTATTTTAGATTGTTTGTTCAAGAGAGTAACGTAATCAGGAGAACAAACTAAAGTAAATGAGAGTAAACAGAGTACCATGTGAACTATAATGATTGCTTCTGGCAAATTTGTGCCAATGACAATGTGCAAGTGGGTTTCAGAATCCTTTTGTCTTTATAATTTCAGTAGTGTTTGATatcagtaatatgtttttttttattgttacactTATTCTACACTGTAAATATAATCAATTAGACTATATATGTTTTTTAGCTAATAGTAACTTATCAAACtgagttaatcatgttctaacttaatttgatTAGTTATGCAAGTCAGTTTAGCACAATGTAAGTTCAATGGACTtgtaaggttaatttgattcagcttaaaaatgtagggcaacctggatttttttttttttttacagtgaacagaTTTGAGGTAAAACTGCTTTTCCAGGTTGGTTATTAATATGACAGTATCAACACAAAATCAAAAACAAGTCACACTGATGGTTACTAGAATGTTTGTAACATAAATGTccagtttgtttttgattttacataatctaaataatgaaattatcACTAAAAGCTAAAAAAGTTGTTCTAAAAGTGTGCATCTGTTTTTTAAATTATGCTTATATTTTCTGTCTACTTATGATACATTAACTAAATTATTACAACTGCCAAtcaaaatgtttacaattttatgCCAAGTAATTCATGTTCTTTAAGTCAATAAATTTAATGATATtcaaaatatgattatttaaacattattacaAATCAACAAGGCAAGGACTTTCCATTCCTGTGTTTATTCACAGAAGTGTCatgcttcattcatttattcattttcttttcggcttagtccctttattaatctggggtcacctcagccaaatgaaccgccaacttatctagcacatgttttaagcagcgggtgcccttccagctgcaacccattactaggaaacacccatgcactccgTGATTCCCAGAACTGACATGGTTTACAATATAATTTATACAATTATTTCTTTTAAGTATTAAAAGGGTACAGTAAACAGTACACAACTTAGAGCAGTGGTTTtaccttttttatgttttatttttataatcaagCATTTGAAATATGTTGGAGGTGGCAAGTTGGctctgtccc

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0048319 axial mesoderm morphogenesis biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0014028 notochord formation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0048368 lateral mesoderm development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066053 lncRNA upstream 28977 27797821 ~ 27799035 (+) True XLOC_033762
TCONS_00068857 lncRNA upstream 224769 27455334 ~ 27603243 (+) False XLOC_033761
TCONS_00068856 lncRNA upstream 263024 27455327 ~ 27564988 (+) False XLOC_033761
TCONS_00066048 lncRNA upstream 378650 27444749 ~ 27449362 (+) True XLOC_033760
TCONS_00066047 lncRNA upstream 403425 27372433 ~ 27424587 (+) False XLOC_033760
TCONS_00068575 lncRNA downstream 225879 28058202 ~ 28089017 (+) False XLOC_033767
TCONS_00066064 lncRNA downstream 225879 28058202 ~ 28189681 (+) True XLOC_033767
TCONS_00068576 lncRNA downstream 1229852 29062175 ~ 29064397 (+) True XLOC_033780
TCONS_00066088 lncRNA downstream 1253239 29085562 ~ 29090937 (+) True XLOC_033782
TCONS_00066099 lncRNA downstream 1349753 29182076 ~ 29182727 (+) True XLOC_033789
TCONS_00066054 mRNA upstream 7036 27802480 ~ 27820976 (+) True XLOC_033763
TCONS_00066052 mRNA upstream 130778 27691647 ~ 27697234 (+) True XLOC_033761
TCONS_00066051 mRNA upstream 132339 27603211 ~ 27695673 (+) False XLOC_033761
TCONS_00066049 mRNA upstream 132399 27455321 ~ 27695613 (+) False XLOC_033761
TCONS_00066046 mRNA upstream 378630 27317174 ~ 27449382 (+) False XLOC_033760
TCONS_00066056 mRNA downstream 1807 27834130 ~ 27887883 (+) False XLOC_033766
TCONS_00066058 mRNA downstream 65768 27898091 ~ 28058520 (+) False XLOC_033767
TCONS_00066059 mRNA downstream 65885 27898208 ~ 28035074 (+) False XLOC_033767
TCONS_00066061 mRNA downstream 144125 27976448 ~ 28058520 (+) False XLOC_033767
TCONS_00066062 mRNA downstream 144742 27977065 ~ 28047220 (+) False XLOC_033767
TCONS_00066055 other upstream 1951 27825945 ~ 27826061 (+) True XLOC_033765
TCONS_00066050 other upstream 167284 27455340 ~ 27660728 (+) False XLOC_033761
TCONS_00066036 other upstream 691366 27059394 ~ 27136646 (+) False XLOC_033759
TCONS_00066032 other upstream 784009 27041364 ~ 27044003 (+) False XLOC_033756
TCONS_00066034 other upstream 784170 27043715 ~ 27043842 (+) True XLOC_033757
TCONS_00066057 other downstream 15687 27848010 ~ 27879593 (+) True XLOC_033766
TCONS_00066060 other downstream 80615 27912938 ~ 27913055 (+) True XLOC_033768
TCONS_00066065 other downstream 421321 28253644 ~ 28255177 (+) False XLOC_033769
TCONS_00066066 other downstream 422773 28255096 ~ 28258626 (+) True XLOC_033769
TCONS_00066067 other downstream 629140 28461463 ~ 28461578 (+) True XLOC_033770

Expression Profile

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