XLOC_033864 (lctla)


Basic Information

Item Value
gene id XLOC_033864
gene name lctla
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 34227075 ~ 34236091 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066248
CCAGCTGAGACAAATGTGAGGCCTGGAGCAGGTGTTACTGGTGAAAAAACAGACCCTGTGAGAGTAAGAGGATGCAACGAAACGGTGTGCTGAGGATATGCACTGTTCTGCTGTTGGCACTGTGCACTTTTGCAAGTGAAGTCTTTGACTGGACCAAGAATGAAATGGGATCGTTTCAATATGGCACATTTCCTTCAGgATTTTCTTGGGGCGCTGGCAGCTCAGCATATCAGACAGAAGGAGCATGGGACAAAGATGGAAAAGGGAAAAGCATTTGGGATATTTTTTCTCACAAGAGAGGGAAAATTGATCGGAATGACACCGGCGACTATTCCTGCAATGGCTATTATAAGATCAAGgatGATATCTCACTGATGAAAGACATGAAGCTGAACCACTACCTCTTCTCCATTTCCTGGCCAAGGATTCTGCCCAGTGGCATTAGGACTGACTACATCAACGAAAAAGGGATAGAACACTATGATAACATGATTAATATGCTTCTGGAGAACAGGATCACACCAATTGTGACGCTCTACCACTGGGACTTACCTCAGGTTCTAGAGGAGAAATATGGAGGTTGGCAAAACGCAAGTATGATCAGCTTCTTCAATGATTTTGCAAACCTTTGCTTTGAGAGATTTGGCAGTCGAGTCAAACACTGGATCACATTCAACAACCCTTGGTCTGTTGCAGTAGAGGGTTACGAGACTGGAGAACATGCTCCTGGTCTGAAGATGAGGGGCAATGGTGCCTATAACGCTGCCCACAACATCATCAAGGCTCATGCTAAAGTCTGGCACACATATGACACCCAATGGCGAAACAAGCAGAAAGGTATGGTGGGCATCTCCCTGTCAGCTGACTGGGGAGAACCAGTGGATGTCACTAACCAGAGAGATATAGAAGCTGCCGAAAGATACGTTCAGTTCCACCTGGGCTGGTTTGCCACGCCACTCTTTACCGGAGACTATCCTCAAATAATGAAAGACTACATAGGAAGGAAAAGTGCCCAGCAGGGCTTAAGCAGTTCTCGTCTGCCTGCTTTTAATCCTCATGAAAAGAGTTACATCAGAGGCACGTGCGACTTCCTGGGCATCAGTCACTTCACCACACGCTACATCACACAGAAGAACTTTCTCCCCAGCCGAGGAAACAGCTACTTCACCGACCGAGATCTGGCGGAGCTGGTCGACCCCAACTGGCCTGATCCTGGATCAGAGTGGCTCTACTCAGTGCCATGGGGTTTCAACCGTCTGCTGAGCTTCGTAAAGACGCAGTATGGAGACCCCATTATATATGTGACAGGAAATGGTGTATCAGAGAAGATGATGTGCACAGATTTGTGTGATGAGTGGAGAATCCAGTACTTCAGGGATTACATCAATGAAATGCTCAAAGCGGTTAAAGATGGAGTGAATGTGAAAGGCTACACAGCTTGGTCACTACTCGACAAGTTTGAGTGGGATGAGGGCTTCTCTGAAAGATTCGGCCTTTATTATGTGGACTTTGGGAGCAAAAATAAGCCACGCTACCCAAAGGCATCAGTTCAGTTCTATAAGCGCATCATCAGCTCCAATGGTTTCCCCAATCAGAGAGAGATTGAAAGCTGGAAAAGAAAGTCACTGGAAACATGCACCTCAAGTAACCAGCTCCTTGCGGCAGCTAGAAGAAAGTCCAAGGAACATGCAGATATGCCAAAGGTTTGGCCTGTGCATGATGAAGTTTAGaTCCATTGATCGGCCACATGGAGATGGTCACAGAGATTGTCATCCCCACAGTGTGCACTCTCTGCATTCTCCTCAGTGCAGTTTTCCTCATGTTTCTGCTGAGAACACGGCTGTAAAACAGACACACTCACATTGACTTTTCATATTGCATGTGTCAGTGCAGCATTTctccttttaatacatttttattattaactatgACAAATAGAGACTTGTTTGTATGTGCTTTCACATAATATGGTCCACAAATGTACTTCTGCGTTCATGAATTGACGGACCAACCAAACATCTCTCAACAAATTACACAGAGAAGAAGTTGAGGTTTGGGTGTTTGATAAAGAGGTGAAAAAATGTAGGTGGAAGTTTTCTGAAAGTATTTTTAAACATAGCAATGGCGTTTGTATATGTGACAAAGACAAACATGACATAAATGCTAtaataaatgtgcttttaaatcttgtaaacaaatataaaattcaGTCCACCAGCATTTAACGCATACACTGCAGTATAAGATCCACATGTATGAGATCTGTGCTTTCAATAAAGGTTGAAACCCTGCA
>TCONS_00066249
TGCCAATCTAGACGTGCGAGAGGAGGGAGAGAGGTTTGAGATAGGGCAAAGCGGCTGGAGCCTCGGAAAAGAAGGGACCTTTTTAATCGTCTTCTCATCCTCTCTCCTTCAGATAGACACGTGCATCTCCTCTCTTCAGGATAAACACTTCTGAGATGTCTTTCTTATTGGCAGCTCTTGACAAACTGGCTTATTTGTTGTCTCTGGTGGCGTTTTGTGTCAGTTTGTCTTATAGCTGGCTGAAATGAGAGTTAATTCATCTGGTCTGGTCTGGGTTTGGGATTCTGGATTTTGGGCTGATTGCATGTGGATTGTGACAGCTTTTTAGTTTGGGATGCGTGATTGATATGCCCCAGCTCCAAGTGCTTTGGAAACTAATCACTCAGAGTGTTACTGGTGAAAAAACAGACCCTGTGAGAGTAAGAGGATGCAACGAAACGGTGTGCTGAGGATATGCACTGTTCTGCTGTTGGCACTGTGCACTTTTGCAAGTGAAGTCTTTGACTGGACCAAGAATGAAATGGGATCGTTTCAATATGGCACATTTCCTTCAGgATTTTCTTGGGGCGCTGGCAGCTCAGCATATCAGACAGAAGGAGCATGGGACAAAGATGGAAAAGGGAAAAGCATTTGGGATATTTTTTCTCACAAGAGAGGGAAAATTGATCGGAATGACACCGGCGACTATTCCTGCAATGGCTATTATAAGATCAAGgatGATATCTCACTGATGAAAGACATGAAGCTGAACCACTACCTCTTCTCCATTTCCTGGCCAAGGATTCTGCCCAGTGGCATTAGGACTGACTACATCAACGAAAAAGGGATAGAACACTATGATAACATGATTAATATGCTTCTGGAGAACAGGATCACACCAATTGTGACGCTCTACCACTGGGACTTACCTCAGGTTCTAGAGGAGAAATATGGAGGTTGGCAAAACGCAAGTATGATCAGCTTCTTCAATGATTTTGCAAACCTTTGCTTTGAGAG
>TCONS_00066250
GGCTGGTTTGCCACGCCACTCTTTACCGGAGACTATCCTCAAATAATGAAAGACTACATAGGAAGGAAAAGTGCCCAGCAGGGCTTAAGCAGTTCTCGTCTGCCTGCTTTTAATCCTCATGAAAAGAGTTACATCAGAGGCACGTGCGACTTCCTGGGCATCAGTCACTTCACCACACGCTACATCACACAGAAGAACTTTCTCCCCAGCCGAGGAAACAGCTACTTCACCGACCGAGATCTGGCGGAGCTGGTCGACCCCAACTGGCCTGATCCTGGATCAGAGTGGCTCTACTCAGTGCCATGGGGTTTCAACCGTCTGCTGAGCTTCGTAAAGACGCAGTATGGAGACCCCATTATATATGTGACAGGAAATGGTGTATCAGAGAAGATGATGTGCACAGATTTGTGTGATGAGTGGAGAATCCAGTACTTCAGGGATTACATCAATGAAATGCTCAAAGCGGTTAAAGATGGAGTGAATGTGAAAGGCTACACAGCTTGGTCACTACTCGACAAGTTTGAGTGGGATGAGGGCTTCTCTGAAAGATTCGGCCTTTATTATGTGGACTTTGGGAGCAAAAATAAGCCACGCTACCCAAAGGCATCAGTTCAGTTCTATAAGCGCATCATCAGCTCCAATGGTTTCCCCAATCAGAGAGAGATTGAAAGCTGGAAAAGAAAGTCACTGGAAACATGCACCTCAAGTAACCAGCTCCTTGCGGCAGaTCCATTGATCGGCCACATGGAGATGGTCACAGAGATTGTCATCCCCACAGTGTGCACTCTCTGCATTCTCCTCAGTGCAGTTTTCCTCATGTTTCTGCTGAGAACACGGCTGTAAAACAGACACACTCACATTGACTTTTCATATTGCATGTGTCAGTGCAGCATTTctccttttaatacatttttattattaactatgACAAATAGAGACTTGTTTGTATGTGCTTTCACATAATATGGTCCACAAATGTACTTCTGCGTTCATGAATTGACGGACCAACCAAACATCTCTCAACAAATTACACAGAGAAGAAGTTGAGGTTTGGGTGTTTGATAAAGAGGTGAAAAAATGTAGGTGGAAGTTTTCTGAAAGTATTTTTAAACATAGCAATGGCGTTTGTATATGTGACAAAGACAAACATGACATAAATGCTAtaataaatgtgcttttaaatcttgtaaacaaatataaaattcaGTCCACCAGCATTTAACGCATACACTGCAGTATAAGATCCACATGTATGAGATCTGTGCTTTCAATAAAGGTTGAAACC

Function

symbol description
lctla Predicted to enable beta-glucosidase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in lens. Orthologous to human LCTL (lactase like).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008422 beta-glucosidase activity molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-233 Predicted to enable beta-glucosidase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in lens. Orthologous to human LCTL (lactase like).

Ensembl:

ensembl_id ENSDARG00000036139

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066248 False 2293 mRNA 0.44 15 34227075 34236091
TCONS_00066249 False 996 mRNA 0.44 6 34227129 34230996
TCONS_00066250 True 1285 mRNA 0.43 6 34231782 34236086

Neighbor

gene id symbol gene type direction distance location
XLOC_033863 NA coding upstream 39720 34163775 ~ 34187355 (+)
XLOC_033862 NA coding upstream 120865 34102306 ~ 34106210 (+)
XLOC_033861 CR927368.1 coding upstream 146777 34080184 ~ 34080298 (+)
XLOC_033860 NA coding upstream 271749 33949284 ~ 33955326 (+)
XLOC_033859 BX511006.1 coding upstream 373768 33853188 ~ 33853307 (+)
XLOC_033865 tipin coding downstream 147 34236238 ~ 34245115 (+)
XLOC_033866 NA coding downstream 48476 34284567 ~ 34288459 (+)
XLOC_033867 fibinb coding downstream 53960 34290051 ~ 34293073 (+)
XLOC_033868 bbox1 coding downstream 60698 34296789 ~ 34315291 (+)
XLOC_033869 NA coding downstream 180975 34417066 ~ 34417507 (+)
XLOC_033870 NA non-coding downstream 217026 34453117 ~ 34470294 (+)
XLOC_033880 NA non-coding downstream 587414 34823505 ~ 34828551 (+)
XLOC_033888 NA non-coding downstream 1112395 35348486 ~ 35351777 (+)

Expression


Co-expression Network