XLOC_033868 (bbox1)


Basic Information

Item Value
gene id XLOC_033868
gene name bbox1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 34296789 ~ 34315291 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066254
ACACATCAGGATGATTACTTTGTGTTGTGTGTAGCAGCGCTTTGGTGCGCGTGACCCTTCACCCACTTCCAGCACAGCGAGTTCTCACACTTCTCAGCACTATATAAGGCTGATAACCGCGGCGACATTACCCACGTCTTCACGCAGCAGCTATTCACGGATCAGGATGTTGTCCTATCTTGCTCGCTGGGTGTCCAGAGGTGCTGTCCAGGCTCTAAAAGGAACAAGCAGTCGGCCTCAACTGGTCAAGACACCTCGTATCGGCAATCAGACTTTGGCAGCGGCTCCTCTGCCCTTTGCTGGGGGCAGTCCAGGAGTGAGACAGGCCCGGGCACTGGATCAGGAGAGATTACTGCAGATCGACTGGGATGATGGGAGCTGTAGTTTGTATCCATTCACCTGGTTGAGGGATAACTGCCAGTGTCCGCTCTGTACGCTGCAGTCGGCTCAAGCACGcagcctgctgttctcacatctGGACGTGCACACCGGGATGGATCACGTACAACTGATGGATAATAAGGTGTCCATAACTTGGCCTGATCAGCACAGCAGTGAGTTTGATCCTGACTGGCTGAAGAAACGCTGCTTTTCCTCTGAGGCCAGACAGGCTCTGCAGGAGGAGCTCTTCCTTAATGAGCGTGAGTATTGGGACTCTGGTCTCCAGATCCCCACAGCAGATTTCGAGGAGGTTCTACATGACGACAAGGCTGCACTGGCCTGGTTAGAAGCTCTGAGACGCATTGGCATAGTCTACCTGAGGGGGGCACCAGCGGAACAGGGCCAGTTGGCCAGACTCAGCCAGAGAATTGGCTACCTGCGCCTCACCTTTTATGGACACACGTGGCAAGTGCAGGACAAGCCCATGGCTAACAATGTTGCCTACACTTCTGGAGAACTGAGTCTGCACACAGATTACCCTGCTCTCCATCATCCACCTGGGgtgcagTTCCTACATTGTGTCCGTCAGGCTGATGAGGGTGGTGAGAGTGAGGTGGTTGATGGGTTTCACATGGCAGAGCAGCTCCGCAGGGAAGATCCAGAGGCGTTTAACATCCTCTCCTCTCTCAGGGTGGACTTCACAGACAGCGGTGCTGACTACTGCGACTTCAGTGTGCAGTCCAAAAACCACATTATAGAGTAAGACCGACTGTGACTCCTACACACGCACAGTCGCACACATTTTTTTATCATGGTACTGTGGATTTGCTTTGTCCCAAGTCATCTTCATCATcaggttaatgtaaataatgtactAAAGAGCGCCATCTCATGGTTGGTTGTGGAAATTAAACGAATAACTGAGGGAATTTCTGTAAATTAAAGCATACTATAGTTTATAAATGAGAATGCAGGTGTCTTCCtatgtaattataattataaacgACATCAAGACAGAATATTGTTACGGTTAGGGATAGAAAGATGGTGATTATACAGGCAAACAAAGTCGGTTGTTATCGCAGTTTAAACCAGAGAGGCTGATATTTCCTTATTGTTTTCTTGAACGCCTGGCTTGTTGTTGGCTATTTCATGATGACAAAGAAATATTTTCTCACCTTAACTTACCTTTTGTTGTCTTACAGTCAATCGAAACGCAAAAAAACTATAATTCTCGTTAACAACAATCGTAAAAAGGCGATTGACCAATCACAATCAGGTGTTCTAgaatctaaagcaggggtcaccaaacttgtttctggagggccagtgtcctacagattttagctccaaccctaataaaacacacctgaacaagctaatcaaggttttactaggtatacttgaaacatcctggcaggtgtgttgaggcaagttggagctaaaccctgcagggaccccggcccttcaggaccgagattggtgacccctgatctagagcgTTGATACCTGTCTTTTAACACCGTGAAATCGAAATGGTCAACTAGTATAAGTATGCTttaagtgtaataataataaactgagtCATACGTTAAAGTTGTTGTGTACCGTTTTGACTCTGAACTGCAatttatcatgtttttctcttcttttcttttcattcttgtataacctgttttaacacatttaatctgtttttaataatttctattatatgttttttaattttcttattcttgtcttttttattcttgttttaaattGCGACTGTGTGTATGGAAtgtgatatataaataaacttgcctttcaTTTCAA
>TCONS_00066255
ACACATCAGGATGATTACTTTGTGTTGTGTGTAGCAGCGCTTTGGTGCGCGTGACCCTTCACCCACTTCCAGCACAGCGAGTTCTCACACTTCTCAGCACTATATAAGGCTGATAACCGCGGCGACATTACCCACGTCTTCACGCAGCAGCTATTCACGGATCAGGATGTTGTCCTATCTTGCTCGCTGGGTGTCCAGAGGTGCTGTCCAGGCTCTAAAAGGAACAAGCAGTCGGCCTCAACTGGTCAAGACACCTCGTATCGGCAATCAGACTTTGGCAGCGGCTCCTCTGCCCTTTGCTGGGGGCAGTCCAGGAGTGAGACAGGCCCGGGCACTGGATCAGGAGAGATTACTGCAGATCGACTGGGATGATGGGAGCTGTAGTTTGTATCCATTCACCTGGTTGAGGGATAACTGCCAGTGTCCGCTCTGTACGCTGCAGTCGGCTCAAGCACGcagcctgctgttctcacatctGGACGTGCACACCGGGATGGATCACGTACAACTGATGGATAATAAGGTGTCCATAACTTGGCCTGATCAGCACAGCAGTGAGTTTGATCCTGACTGGCTGAAGAAACGCTGCTTTTCCTCTGAGGCCAGACAGGCTCTGCAGGAGGAGCTCTTCCTTAATGAGCGTGAGTATTGGGACTCTGGTCTCCAGATCCCCACAGCAGATTTCGAGGAGGTTCTACATGACGACAAGGCTGCACTGGCCTGGTTAGAAGCTCTGAGACGCATTGGCATAGTCTACCTGAGGGGGGCACCAGCGGAACAGGGCCAGTTGGCCAGACTCAGCCAGAGAATTGGCTACCTGCGCCTCACCTTTTATGGACACACGTGGCAAGTGCAGGACAAGCCCATGGCTAACAATGTTGCCTACACTTCTGGAGAACTGAGTCTGCACACAGATTACCCTGCTCTCCATCATCCACCTGGGgtgcagTTCCTACATTGTGTCCGTCAGGCTGATGAGGGTGGTGAGAGTGAGGTGGTTGATGGGTTTCACATGGCAGAGCAGCTCCGCAGGGAAGATCCAGAGGCGTTTAACATCCTCTCCTCTCTCAGGGTGGACTTCACAGACAGCGGTGCTGACTACTGCGACTTCAGTGTGCAGTCCAAAAACCACATTATAGATGTGGACTCATCCGGTCGGGTTGTGAGGATCAACTATAATAATGCCACTCGAGACTCAGTGCTGGATCTGCCTCTGCATCAGGTTCAGCCCTTCTACTCGTCTCTGAAGGCCTTCGTGGAGCTGCTCAGCCGGCCGGAGAATGTCTTCACTTACAGAATGGAGCCAGGTGATGTGGTGACCTTCGATAACTGGCGTCTGCTGCACGGCCGAAAGAGCTACCAGTCTCGAGGGCAGAACTTAAGACATCTAGAAGGAGCGTATCTGGACTGGGACGAGGTCATGTCCCGTCTCAGGATCCTCCGGAAGACGGTCCGCGGAGACAGCTagactctcctcctcctcctcattctCCCCACTACAATCACAGTTGATGTTTGAGGCATCCTCTGCTTTTTATTGGCTTCACAATAACTTTACAAACAGGATATTAGAGACCGCTTTGGATTTTAGAAGTATTTTTGCCAAGTAGATATTCATTCTTCTTTAATGTCTAATATTATTGCAGTCATTTTCTGAGGACGGTGGAAGTCTTCATTTCATACAGGCACTTATTTAGAGTGTGCAAACATTTGCTTTGCcttattactatttttacataAGGGACAATTTGCCAGCAGCCACTTTTGAATTTGGTTAGTCTTAATATATTAATGATGATCACAACTGACGGTCACATTTTGTCTGTTTTGCTTATGTGTGCACAATTGCCCAAAATACGCTATGAGTTACAACTAATACAATGGGTTTACTTTGAACCACTGATGTAGTTCATTATATAAAGtttgaattattcattttaacAGTCAGTATTTTTCCCATTTTAAGGACTGTTATGCCATTATGGTTAATAatgtagaacaggggtgtccaaactcagcccaggagggctgatgtcctgcagaaGGTAACTCCAACTCACCTCAACaaacctgcacggatgtttcaagaaagcctagtaagagcttgattagctagcccaggtgtgtctgattggagttggaactaaactttgctggacaccggccttccaggaccgagtttggccacccctgatgtaGAAAGTACTTCTGTTTTGATATGGAGACTGAATTGTTCATTTGATTACCATATCAGTACTTGTATACTGATTCAGCTCTTTGATACCTGAAACGCCTCAAAGACTTTTTTGGATGAATGAAATTCTAAAGAAAAGCCAATTTGTACTAATGCAGCAACAATGCAAATGTAGCTCatgttttgtaaataatatattctACGAGCTCAGGATTATGACCTTCTCCATTGGGCTTCTGATGAGCCTCCTTGTAAACATACAGTACTTTATTGTGAAGTCTTGATggagagtttatatatatatatatataaatataaacatatgttggaattgAAGTGTTACTTATGATGGTTTGGCAAGAGTCTGACAGAGATCTCTTTCCCAAACTGACAATAAAAGACATTTCTAATGTACTGT
>TCONS_00066256
AGGCTGATAACCGCGGCGACATTACCCACGTCTTCACGtgtttgtgtgtgtacctgctgtcGTAACGCTGGAGGCGGCAATTGTCCTTATTTTGGGAAGAAAGTAATGCTGACCTTTCACCTACTTCCGTGTTCTCGGAGACGTTAGGTCACATGAACAAAGCAGCTATTCACGGATCAGGATGTTGTCCTATCTTGCTCGCTGGGTGTCCAGAGGTGCTGTCCAGGCTCTAAAAGGAACAAGCAGTCGGCCTCAACTGGTCAAGACACCTCGTATCGGCAATCAGACTTTGGCAGCGGCTCCTCTGCCCTTTGCTGGGGGCAGTCCAGGAGTGAGACAGGCCCGGGCACTGGATCAGGAGAGATTACTGCAGATCGACTGGGATGATGGGAGCTGTAGTTTGTATCCATTCACCTGGTTGAGGGATAACTGCCAGTGTCCGCTCTGTACGCTGCAGTCGGCTCAAGCACGcagcctgctgttctcacatctGGACGTGCACACCGGGATGGATCACGTACAACTGATGGATAATAAGGTGTCCATAACTTGGCCTGATCAGCACAGCAGTGAGTTTGATCCTGACTGGCTGAAGAAACGCTGCTTTTCCTCTGAGGCCAGACAGGCTCTGCAGGAGGAGCTCTTCCTTAATGAGCGTGAGTATTGGGACTCTGGTCTCCAGATCCCCACAGCAGATTTCGAGGAGGTTCTACATGACGACAAGGCTGCACTGGCCTGGTTAGAAGCTCTGAGACGCATTGGCATAGTCTACCTGAGGGGG
>TCONS_00066257
tgtttgtgtgtgtacctgctgtcGTAACGCTGGAGGCGGCAATTGTCCTTATTTTGGGAAGAAAGTAATGCTGACCTTTCACCTACTTCCGTGTTCTCGGAGACGTTAGGTCACATGAACAAAGCAGCTATTCACGGATCAGGATGTTGTCCTATCTTGCTCGCTGGGTGTCCAGAGGTGCTGTCCAGGCTCTAAAAGGAACAAGCAGTCGGCCTCAACTGGTCAAGACACCTCGTATCGGCAATCAGACTTTGGCAGCGGCTCCTCTGCCCTTTGCTGGGGGCAGTCCAGGAGTGAGACAGGCCCGGGCACTGGATCAGGAGAGATTACTGCAGATCGACTGGGATGATGGGAGCTGTAGTTTGTATCCATTCACCTGGTTGAGGGATAACTGCCAGTGTCCGCTCTGTACGCTGCAGTCGGCTCAAGCACGcagcctgctgttctcacatctGGACGTGCACACCGGGATGGATCACGTACAACTGATGGATAATAAGGTGTCCATAACTTGGCCTGATCAGCACAGCAGTGAGTTTGATCCTGACTGGCTGAAGAAACGCTGCTTTTCCTCTGAGGCCAGACAGGCTCTGCAGGAGGAGCTCTTCCTTAATGAGCGTGAGTATTGGGACTCTGGTCTCCAGATCCCCACAGCAGATTTCGAGGAGGTTCTACATGACGACAAGGCTGCACTGGCCTGGTTAGAAGCTCTGAGACGCATTGGCATAGTCTACCTGAGGGGGGCACCAGCGGAACAGGGCCAGTTGGCCAGACTCAGCCAGAGAATTGGCTACCTGCGCCTCACCTTTTATGGACACACGTGGCAAGTGCAGGACAAGCCCATGGCTAACAATGTTGCCTACACTTCTGGAGAACTGAGTCTGCACACAGATTACCCTGCTCTCCATCATCCACCTGGGgtgcagTTCCTACATTGTGTCCGTCAGGCTGATGAGGGTGGTGAGAGTGAGGTGGTTGATGGGTTTCACATGGCAGAGCAGCTCCGCAGGGAAGATCCAGAGGCGTTTAACATCCTCTCCTCTCTCAGGGTGGACTTCACAGACAGCGGTGCTGACTACTGCGACTTCAGTGTGCAGTCCAAAAACCACATTATAGATGTGGACTCATCCGGTCGGGTTGTGAGGATCAACTATAATAATGCCACTCGAGACTCAGTGCTGGATCTGCCTCTGCATCAGGTTCAGCCCTTCTACTCGTCTCTGAAGGCCTTCGTGGAGCTGCTCAGCCGGCCGGAGAATGTCTTCACTTACAGAATGGAGCCAGGTGATGTGGTGACCTTCGATAACTGGCGTCTGCTGCACGGCCGAAAGAGCTACCAGTCTCGAGGGCAGAACTTAAGACATCTAGAAGGAGCGTATCTGGACTGGGACGAGGTCATGTCCCGTCTCAGGATCCTCCGGAAGACGGTCCGCGGAGACAGCTag
>TCONS_00066258
ATGCAAAAACAGACACTGGAGCTGGTTTTACGGTAGGCAAGAAGCGTGAGTATTGGGACTCTGGTCTCCAGATCCCCACAGCAGATTTCGAGGAGGTTCTACATGACGACAAGGCTGCACTGGCCTGGTTAGAAGCTCTGAGACGCATTGGCATAGTCTACCTGAGGGGGGCACCAGCGGAACAGGGCCAGTTGGCCAGACTCAGCCAGAGAATTGGCTACCTGCGCCTCACCTTTTATGGACACACGTGGCAAGTGCAGGACAAGCCCATGGCTAACAATGTTGCCTACACTTCTGGAGAACTGAGTCTGCACACAGATTACCCTGCTCTCCATCATCCACCTGGGgtgcagTTCCTACATTGTGTCCGTCAGGCTGATGAGGGTGGTGAGAGT
>TCONS_00066259
AGCGTGAGTATTGGGACTCTGGTCTCCAGATCCCCACAGCAGATTTCGAGGAGGTTCTACATGACGACAAGGCTGCACTGGCCTGGTTAGAAGCTCTGAGACGCATTGGCATAGTCTACCTGAGGGGGGCACCAGCGGAACAGGGCCAGTTGGCCAGACTCAGCCAGAGAATTGGCTACCTGCGCCTCACCTTTTATGGTGATTCCTTAGTCTTTAAATTTACTCGCAAGACGGTACTAAATCAAACACACGTGGCAAGTGCAGGACAAGCCCATGGCTAACAATGTTGCCTACACTTCTGGAGAACTGAGTCTGCACACAGATTACCCTGCTCTCCATCATCCACCTGGG

Function

symbol description
bbox1 Predicted to enable gamma-butyrobetaine dioxygenase activity. Predicted to be involved in carnitine biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Is expressed in male organism. Orthologous to human BBOX1 (gamma-butyrobetaine hydroxylase 1).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0045329 carnitine biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0008336 gamma-butyrobetaine dioxygenase activity molecular_function

KEGG:

id description
ko00310 Lysine degradation

ZFIN:

id description
ZDB-GENE-050417-218 Predicted to enable gamma-butyrobetaine dioxygenase activity. Predicted to be involved in carnitine biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Is expressed in male organism. Orthologous to human BBOX1 (gamma-butyrobetaine hydroxylase 1).

Ensembl:

ensembl_id ENSDARG00000036135

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066254 False 2196 mRNA 0.45 6 34296789 34312434
TCONS_00066255 False 2612 mRNA 0.47 8 34296789 34315291
TCONS_00066256 False 781 mRNA 0.53 5 34296895 34306030
TCONS_00066257 False 1445 mRNA 0.54 8 34297271 34314147
TCONS_00066258 False 395 processed_transcript 0.54 4 34305595 34311229
TCONS_00066259 True 351 mRNA 0.52 3 34305903 34310252

Neighbor

gene id symbol gene type direction distance location
XLOC_033867 fibinb coding upstream 3716 34290051 ~ 34293073 (+)
XLOC_033866 NA coding upstream 8330 34284567 ~ 34288459 (+)
XLOC_033865 tipin coding upstream 51674 34236238 ~ 34245115 (+)
XLOC_033864 lctla coding upstream 60698 34227075 ~ 34236091 (+)
XLOC_033863 NA coding upstream 109434 34163775 ~ 34187355 (+)
XLOC_033869 NA coding downstream 101775 34417066 ~ 34417507 (+)
XLOC_033870 NA coding downstream 137826 34453117 ~ 34470294 (+)
XLOC_033871 cln6a coding downstream 172542 34487833 ~ 34492609 (+)
XLOC_033872 calml4a coding downstream 177453 34492744 ~ 34496196 (+)
XLOC_033873 rfx7a coding downstream 191504 34506795 ~ 34546833 (+)
XLOC_033862 NA non-coding upstream 190579 34102306 ~ 34106210 (+)
XLOC_033861 CR927368.1 non-coding upstream 216491 34080184 ~ 34080298 (+)
XLOC_033860 NA non-coding upstream 341463 33949284 ~ 33955326 (+)
XLOC_033880 NA non-coding downstream 508214 34823505 ~ 34828551 (+)
XLOC_033888 NA non-coding downstream 1033195 35348486 ~ 35351777 (+)
XLOC_033889 NA non-coding downstream 1119955 35435246 ~ 35763213 (+)

Expression


Co-expression Network