XLOC_033873 (rfx7a)


Basic Information

Item Value
gene id XLOC_033873
gene name rfx7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 34506795 ~ 34546833 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066266
CGGCGCAGTGCGCATGCGCGCTCTCAGCAGCAGCAGTGGTCGGCAGGCGAGCTGTAGGTAGGTAGTGTGTGTGACTCTCAACCTGCTGCAGCTCGAAGTGTCTCCATGCTCCTGGTGCACCCACAGGGATTCTGAGGAGCTCAcctgcaaccccaaaccatgaatgACCAACGTGATCTGGCAGAGCCGAATCCGAACAGTCCCTGAAGTCAACAGGCGGTGATCGTGATGTGCTATTTACGGAGGAAAGCTGCATTCTCCAGGTTCAGGTTAAGGCCTACTTGTTAGATCCCCATCCTCGTCTCAGCAGAGTCGCATCGTGATGGCAGATGACCAGCAGCAGTCGGGACCCGGAGCTGGACCTTTACCGTCCGCGGTTCAGGGATTGCAAGGGCCCGAGGCGAGTGCTCTGCAGCTGAAGATAAAGAACTCTATCTGcaaaactGTACAATCGAAGGTGGATTGCATTTTGaGGCCAACTAGCCAAGTGTTGTGCAGATCAACCTAACTTCTCTgacttctaaaggtgctcta
>TCONS_00066267
AcctgcaaccccaaaccatgaatgACCAACGTGATCTGGCAGAGCCGAATCCGAACAGTCCCTGAAGTCAACAGGCGGTGATCGTGATGTGCTATTTACGGAGGAAAGCTGCATTCTCCAGGTTCAGGTTAAGGCCTACTTGTTAGATCCCCATCCTCGTCTCAGCAGAGTCGCATCGTGATGGCAGATGACCAGCAGCAGTCGGGACCCGGAGCTGGACCTTTACCGTCCGCGGTTCAGGGATTGCAAGGGCCCGAGGCGAGTGCTCTGCAGCTGAAGATAAAGAACTCTATCTGcaaaactGTACAATCGAAGGTGGATTGCATTTTGCAAGATGTGGAGAAGCTTACGGACATTGAAAAACTCTACCTCTATCTCAAGTTGCCTTCTGGACCCAGCAGTGGCAATGAGAAAAATGAGCAGAGCTCCATGACATCAAGTCGTACCCAGCAGATGCACGCATTTAGCTGGATTCGTAACCATCTTGAGGAGCATCCGGAAACATCGCTGCCTAAACAGGAAGTCTACGATGAGTACAAGAGTTACTGTGATAGTTTGGGGTATCACGCTCTCAGTGCTGCGGACTTTGGAAAGATCATGAAGAACGTCTTTCCCAACATGAAGGCACGTCGACTTGGCATGCGAGGCAAATCCAAATATTGCTATAGTGGACTTAGGAAGAAGACCTTTGTACAGATGCCATCTCTTCCCAACTTAGATCTTCACAAATCGGGTGATGGGTGTGAAGTGTTTGAGTCTACTGGTCAACTATCCAGTGCTGAAGATGAGGTGCGCATGGCTGCATGTGGGTTGGTGTGCGAGTGGGCACAGAAGGTGCTGAGTCGGCAGTTTGACAGCGTTGAAGATCTGGCTCGGTTTCTTTTAAACAGCCACTACATAGGAACCAAGTCTGTGGCTGCTCTTACTGTGATGACCGGTTCCCCCTCAGgagcAAAGATGTCAATTCAGTCATCTGCATTTGCTCCCACAACCGATTCACACTCATTCCAGCCTCAGGTTAAAACCCTGGTTTCACCCTCCATAGATGCCAAACAGCAGCTACAACGGAAAATACAGAAGAAACAGCAAGAACAGAAACTGCATTCTCCACTCCCTGTAGAGGCTCAGGCCAGGAGGGCAGATGGGGGCATAACTCCTGTAGCAGGCACAGGCATACCCTGTGGAAGTCCTGCTCTTCTGTCGCCACAACCTATTGGCATTGTGGTTGCAGCTGTTTCCAGCCCAATCACGGTTCAGAGAAGTAGGCAATTAATGTCTCCTAGCCCTGTACCCATGGCATCTGCAGACAGCAAAGTTCTTCCTGTAAACTTTCAAGTGGTTACCCAATCTGTTCAACCTGTTAAACAGTCCCCCAAGGCACCTCATAATATCTCAGCTAGTCCAGTAAGTGACCGATCAGCTCGTCACCGGTATGCTCAAATTCTGCCCAAGCCATCTGCCTCAAGTGGCATAACCCTACGTTCACCAACCTTACTCTTCACCAATAGCCCCATAAAGACTGTAATGTCTACTCCACATGTCAGTTCAGTCAATGTAGTCAAGATGACGACTATATCTCTGGGCTCTAATGGCAGTGGGACCAGCACGCCAGCAGATGCTCTTACCAGCAACAAAGCCAGACCTGCATCTGCTGGAGTTTCTAGTCTCAGCGACGATCCACAGCCAGTTACACGTGTCCGCAGTGGTTCTATAGCTGCAATGCCATCTGCTTTGGCTCGGTTAGGGCGCTCAACAACCATAACACCTATCAGCGATACTAAAATAAACACAGAAGCCATAACTGGAAGTGGGCAAGAGCAGGGTGGTATTAGTAGGCTGGCAGCTGCTGCAGATGTTGGTGGTAGTGGTGTACCAAGGTCAGTAATGTTCAAACCCAGAGCAGCTAGCGTACCCAGTCCTCATGACAAGGCTTCTCCTGGATTGGGCACAGGGACCAAATGCAATGGAAGGACTCTCCTTAGAGTCAATACTATGGCTGCTGGCAGCAATAATATATCCAACACTAATGCAAACACTTTGTACCAGATCCCAGGCAGCGCTCAGTCAGTCACTGATAAAGTAATGACATCACCCAAAGATGCAGTGTTGGCATCCAAGAGCCCTCACAAAAGACCTGGCTTGTGCACTGATTTGAGCCCAACACCTGTTAAAAAAGCCCACATCTCAATATTACCAGACACTGGTTCAAATGGACAAAAGTCAGATATAATGGTGAAGCAAATTCCAAGATCATGTACTCCAGTCAGGCCAGAAAGTGCACCCCTCACGGCCATGGCCAAAGTTACCGCAGGTCCGGTAAGAAATTCTGGCTTTCAGACAGTTCACAGGCCACAAAGGATCTCCCAAACCAATGAGATGCTTTGTGGACTAGAAGGAGCTTCATCAGGATTGGACTATAGAGTTCCTGTCACCTCTACTTTAAGTCAGGATACTTCAATGGAGAATACAATATTTCAGTCTGTTTGCAGACCTCGGAGCATCTCCCAAGGGAGATGGGAAGGATCTTCTACAACCGTTGAAGGCAGAGTTGTGGTCACCCGAACTGTTAGCGCTCCAGGTCAAGCTTTGCTACAGCAAGCTGCAAAAATCTCACAAGATTTGCTTGTAGACCAGACCGATCCTTCTGGAGTTTGTGAAATGAAAGGTGTCTTTTGGGAGAGTGAGCTGCAAGATGGCACTCAACAACATCAAGATGTTTATGGTGCACAAATGGTGCCTGAGCCAAAGAAAATGCCTACCCCAGTGATGGACCCCCTTCCTGCAATTACTCAAGCTTCTCCTTCCAACCAAGAGGCTCAGATGAGTGACTATGGCACCCAGACCAACATCGGCTACTTCACATTTAATGATGATGACATGACGCAGGATAGCATTGTGGAGGAACTTGTACAAATGGAGGAGCAGATGAAAATTAATAATAGCATACAAAATTTCAGCAACTGTGTGGATATTTCGATGCAAGGCCAGCAACAATCAATGCAGACAACCATGATGTCTACCCTACAGACCAACACCTTGTACTATAGTTCTGCTCATAGCAGGGGTACCCCAATCCAAACACCTACACCAACACCTACTCCAACTTCTGAGATGATGGGAAGTGGCCAGGGATTGATGCACGAAAGCCCTTGTTCACGCCTAGTTCCCACCACTCCAGTCGACAGTGCTCTTGGAAGTAGTCGACAAACACCTATTGGCACACCACACTCTAGctgcagcagtagtgtcccacCCAGCCCTGTGGAATGCAGGAACCCTTTTGCATTTACTCCGATTAACTCAAGCATCACTGGATACCATGATGGAAGTACTGTCTCTTCAAGTCCTGTAAAGCCCATGCAAAGACCAATGGCCACACATCCAGGGAAGACTAAACTGGAGTGGATGAATAGTGGATACAATAACAATGGTGGGAACTCTAACAATGGCATTAGCATTCTGCCCAGCTACCAAGACTTGGTAGATGACCACTTTCGAAAGCCTCATGCTTTCGCCATCCCAGGCCAGACCTGTCAGTCACAGACCAGACATCATGACACGCATATCAGCCGCTTGACACCCATTTCACCTGTCCAACAGCAAGTGGCAAGTATGGCTAGCCTCAACAAGAAAGAGGGTTTTGCAGTTCCAGCACCTCTTGATAACAAGACCAGCACTTCCTCTGGAACATTTCGTTGTCGAAGCGTTAGCCCGGCAGTCAGACAGCGCAACCTGAGTGGGACCCAAGGTCCAAATGTTCCTGACACCATGGTCTCTCCATTCAACTCACCTGTAACACCTGAAGTGCTAAGCATATTTTCTAACAGTGACCCTGACGCAAGCATCAGCAGCATGGCACAGAGGAGTCAGTCCGTTCCAGTTACTGTGATGATGCAGTCTGAGGTGCTGCCCATGCAAGCAGGCCAGCAGATTAATACCAAAAacatcaccaatgtcctcatcAGCAAAATGGATGGTGATGGAGATGACTCAGTACGTGGCCTCGGAATCAACAACATGCCATCCAACTATACTGCCCGCATGAATCTCACCCAGATTCTGGAGACCACCACAGTGCCCAGCCTCCCTGGTAGTGCCAGCCACCAAGCTCTGATCTCACCTTGTTCATCAGCCTTTGAGTCCCAGAAGCCTGGTTACCTCATGAAAAATGCCAGGGAGGAGCCGATGATCTTCTCTGTTGGTGAAAGCCAAGCACAATCAGCCTCAGTGGAGCACCAGCCACCACCaccacaacaacagcagcagcagcacttGGGTAGACGGCAGCTCCTTGGGCAGGAACAGCAAAGTCAGGCCATTCTGTTGCCTTTACAGCAAAACCTCCAACAACATCAGCACCAGCAACCCTTGGATCTAGATCGAACTGTTAAAGATCTTTTACATGAGGAAAGCTTGAATGCTGGCTCACAGCTTGTGGGGCAAGGATCAGAGCTCAGTGCTGGAGGTTCAGAGTTTCCTAACAATATGCGACTGACTTCTGAACTGACAGGTagcataaatgatttaaatactTTGGACACCAACCTTCTTTTTGACCCCAGTCAACAGCAAGGACAATATGAAGACTCGACACTGGAAGAACTGAAGAATGACCCACTTTTTCAACAGATTTGCAGCGAGACTGTGAATTCTGCTGGCTTTGACTGGTTGGAGAGCAAAGACCAGGCCACAGTGGAAATGCTGGGTTAAGTTGAGCTTGTTTTGATATTTGTACAGTTTTCTATATATGTACTTTTAAAATTTCCTCATTCTATGTATTCACCTCATTGTTGTGCAGCACCTACTACAGTAAGCCCCTGTATGTCATGACACAGGCTCATACTGAAGTGTCAGGCTGAACAGAAATTGCGCTTTTAATACTGccgttttgatttagttttttttgtctcAGTAGTTAGTACAACACAGGGGGAGTGCTGTCACATTTTTTCTCCTCTTTCCCACCAGTCAGAGCTTTACATGAGAATTCACCAGAGAGCTTTCTATGCCTCTACACTGTTTAGTGCATTCAGTTACACAACTTTTATataaacctttgaatattttgcaTTCAAAGGGCATTGCATGGAAGACTGGAAAATGAGAAATTCTTTTAAACCCTTTATCTTAAGAATTTGTATTTTGATGTCACACCAGCTATGTAAGGTATTGTACCTTTTCTAATTAGCTTTTTCATTTTGTGAAGACAAAATCGGTGCTTCCATGTGCAGAAAACTCTAATAAGCTTTGAACATACTGTATTTCCTACAGTAAACCGAACAAGAGATCACATCAGCAATGTTGAGCTTTCAGGTCATGCTTAATATTGAAATCCAACAGCTTAAAAAGCTTAAACCCGCAGCAGCTGTTCAGAAAGTAACTTATTGTTAACATTTGCAATGAGAGCCAATTAATCCTATTGTCAACCACTATGTTAATTGGGGAAAATGCATATACTTGCACAAAATGGTTTTATGTTAGTTAAATGATGTTCAAAGTGAATAAATGACTGTACTTTTAGGGTTTAACATCATATGTATTAATGTTTAGCTAATTGACGTCTATAAATTAGATCCCATGGGGTTTATTTTTGGAATTACGCTTCCCTAAGCTGCGTCTCAGGTTTCCCAGCCTGTAGATTTAACAAGATCAATCAGATTTTATCCAGCAGGACAGGCTGGGTTTGATTAATACGCAATCACTGAATAATAATAGCACTGGATATTGCACTAGCTGGCACCTTTTATTATATTTGCGAATTGAATACGGTCATGAAATGTCTCATTTTAAGTCTAGAGAATTTGAAGGAAATATTGGGGGTATTACTAACCAGTGAAAAATGCCAAAGGGGGTTATAGTTGTGGAAAGAAAAAGGTGTAAAACTATCCCAAATGTCTATTGTATCGTTAACTATGCATTAATGAGGTCAAGAAAAAGTTGATTAGCCAGATTTTTGCCTCTttatgaatatttcccaaatcgaTGCTTGTAATTTAGCAGTTTGCGTAAATGAGATTGAGTGAAGTATATATGCTGTCATGCACATGCCTCGTTTTGGCATCTTCAGTGACTGTTTTCTACTTGAGCACTTCATTCAGGAACTTCTTTGTAACATGCACTATTAAAGAGCCTGTACCCCTTAATCATAAAAACGTACCAGCTGTAAAAACATCAGGAAAACTGAAATTACCCAGATTACATTACTAATAAATGAGCTCATTGCTAATTTCATCGAAAATCCCACCCCAACTCCCACTTGCTATGAAAGCTGAAATTAAAGCATCATTACTCTACCATTTTTGTACTGAAGTACTTGAAGTACTAGTAGACTGCTTTCAGAACATGAGACGCATTGTTTGCGGAGTTTGGTAGTTGTTTAAGTCCATCTTAGCCTTACTTCCATACCAAAGACAAGTTTTGTATTTACTGAGGGGAAAAATTGTTTAGAGGAATCCTACATTTTTAGTATCACCATTTTCAAAATCAGCTTTTAATatgcatgtttttaaaacatttgtggaaAAGTCACCTAGGCTTCAAAGAGGCCAAAATAGTAGGGTTAAAAAGGGAACTTGTTTTGTTGAATGCATAGTGTTGTTTGACCACTGTAGCACTTGAATTTATTTACAGGACATGTCAGACTTGATGCTTCTGGTATTTGTAGCAGAAAACCTTGTTGTTATGCTTTGTAAATAAGCTCCATTTGTAAAGGGTAAAAATATGATGCTGTATTACCAGTTTTACTAACAATCATATTGACATTGCAACCGAGTTGATGGTTATCACTGGTCtttttgaccattttttttttattgttacagtTAATAGTTTTCACAACTAGACATCTCTTGTATAGAAATAGCTTGTGTGAGTTTTAAAGCATTTTGTTCCACTTATTTAATGTTCACTGGTTTCCATTTTTTATAGCATCTTGCCTTGGTTTTGCAGACGAGTGTGCTTTTGTGTGAATATAGCATGgattttaaaatgtgttctgGTTTTATATTACCAGGTTGCATATCTTTTTTGTGATAGACAGGGACTGAACAGTTAATACTGGAAATGTAACTGCTGAAAATTCACAGAGTTCCTGCAGTTCGTTTTATTGCACTAATTTCTTTAATGAACTTCGGCTTTGAGAATTTCAGTGCAATACATGAAGCCCCAGTATACTGTTTTGAACTACTTTTTAGGGGTGGAAAAGATTCTGATGAAAAGTGTTTGTTCTTATGTTTAAGAGACAATTGAGAAGTACTTGTAAATGAGTGAAAGCAATTGAAATGTTTAACTAAAAACGTTTAAGTAATGCAATGTTCATTACATGATCAAAAGcgtaaatatgcatttaattcacTGTACATAAAAGTCATGAATCTTTATAGCAAAATAAGTGTTTCTGTCTAACAGAAGGAAATTCACCTGTTGCATTGTTTTGACGACTCAGAAAATTACCtatgttcattttttattaatattattattatttattttaaaatgtcttcaacATGAGGAGTTTCCTTCCTCTTTTAGTATCTATGTTAACATTTTTTTGAACAAGCACTACTATTTCTACTTTAATGAAGAGGCAGGCCAGATTTGTGACTGTTCTATTCTCTGACCTGGTAGAATTAATCGTTCTCTGTGTGTTTTTCCTACCTTTGCTATTCtctcatgttgttattgtttatgTACAGTCTCTTTATGCTAGTTTGATAAATTTGTTATGACATTTCAACAAGAATTTCTTCATTCTTTTGTATTTAAAGTGCTTACTGATGTTGAGATTTTTTAAGTGGTTTGAAAAACcaataaacattttgtaaagta

Function

symbol description
rfx7a Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Orthologous to human RFX7 (regulatory factor X7).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100309-3 Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Orthologous to human RFX7 (regulatory factor X7).

Ensembl:

ensembl_id ENSDARG00000077237

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066266 False 534 processed_transcript 0.54 3 34506795 34526500
TCONS_00066267 True 7827 mRNA 0.43 9 34506937 34546833

Neighbor

gene id symbol gene type direction distance location
XLOC_033872 calml4a coding upstream 10599 34492744 ~ 34496196 (+)
XLOC_033871 cln6a coding upstream 14186 34487833 ~ 34492609 (+)
XLOC_033870 NA coding upstream 36501 34453117 ~ 34470294 (+)
XLOC_033869 NA coding upstream 89288 34417066 ~ 34417507 (+)
XLOC_033868 bbox1 coding upstream 191504 34296789 ~ 34315291 (+)
XLOC_033874 fhod1 coding downstream 2365 34549198 ~ 34618314 (+)
XLOC_033875 slc9a5 coding downstream 73585 34620418 ~ 34653251 (+)
XLOC_033876 plekhg4 coding downstream 141136 34687969 ~ 34776900 (+)
XLOC_033877 si:dkey-148a17.5 coding downstream 239758 34786591 ~ 34788033 (+)
XLOC_033878 si:dkey-148a17.6 coding downstream 242520 34789353 ~ 34791992 (+)
XLOC_033866 NA non-coding upstream 218336 34284567 ~ 34288459 (+)
XLOC_033863 NA non-coding upstream 319440 34163775 ~ 34187355 (+)
XLOC_033862 NA non-coding upstream 400585 34102306 ~ 34106210 (+)
XLOC_033880 NA non-coding downstream 276672 34823505 ~ 34828551 (+)
XLOC_033888 NA non-coding downstream 801653 35348486 ~ 35351777 (+)
XLOC_033889 NA non-coding downstream 888413 35435246 ~ 35763213 (+)
XLOC_033890 NA non-coding downstream 1279572 35826405 ~ 35828249 (+)
XLOC_033892 NA non-coding downstream 1825018 36371851 ~ 36392692 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_07900733_07907266 RFX7 coding CI01000026 null 7900733 ~ 7908808 (+)