CI01000026_07900733_07907266 (RFX7)


Basic Information

Item Value
gene id CI01000026_07900733_07907266
gene name RFX7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 7900733 ~ 7908808 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_07900733_07907266.mRNA
CAAGATGTGGAGAAGCTTACAGACATTGAAAAACTCTACCTCTATCTCAAGTTGCCTTCTGGACCCAGCAGTGGCAATGAGAAAAATGAGCAAAGCTCCATGTCATCAAGTCGTACCCAGCAGATGCACGCATTTAGCTGGATTCGGAACCATCTTGAGGAGCATCCTGAAACATCACTGCCTAAACAAGAAGTCTACGACGAGTACAAGAGTTACTGTGATAGCCTGGGGTATCATGCCCTCAGTGCTGCAGACTTTGGAAAGATCATGAAGAACGTCTTTCCCAACATGAAAGCGCGTCGACTTGGCATGCGAGGCAAATCCAAATATCCTTCAATGGAACTTTTTTGTGAAGCATTTGAGCCTACTGGTCAACTGTCCAGTGCAGAAGATGAGGTGCGCATTGCCGCATGTGGGTTGGTGTGTGAGTGGGCACAGAAAGTGCTGAGTCGGCAGTTTGACAGTGTTGAAGATCTGGCTCGGTTTCTTTTGAATAGCCACTACATTGGAACTAAGTCTGTGGCTGCTCTTACTGTGATGACCGGTTCCCCCTCAGGAGCAAAGATGTCCATTCAGTCATCTGCATTCGCTCCCACAGCCGATGAACACTCATTCCAGCCTCAGGTTAAAACCCTGGTCTCACCCTCCATAGATGCCAAACAGCAGCTACAAAGGAAGATACAGAAGAAGCAGCAGGAACAGAAACTACATTCTCCACTCCCTGGTGAAGCTCAGGCCAGGAGGGCAGATGGGGGCATAACTCCCGGGGCAGGGACATGCATACCTTGTGGAAGTCCTGCTCTTCTTTCGCCACAACCTATTGGGATTGTGGTTGCAGCTGTTTCCAGCCCTATCACGGTTCAGAGGAGTAAGCAGTTGATGTCTCCTAGCCCTCTTCCCATGGCAGCTGCAGACAGCAAAGTTCTTCCTGTAAACTTTCAAGTGGTTACCCAGTCAGTGCAGCCTGTTAAGCAGTGCCCAAAGACACCTCATAACATCCCAGCTAGTCCGGTAAGCGACCGATCAGCCCGGCACCGGTATGCCCAAATCCTGCCCAAACCATCTGCCTCAAGTGGCATAACCCTGCGCTCGCCAACCCTGCTTATCACCAACAGCCCCATAAAGACGGTAATGTCTACTCCGCACGTTGGTCCGGTCAATGTTGTCAAGATGACAACCATATCTCTGGGCTCTAATGGCAGTGGTAATAGCACACCAGCAGATACCTCTACCAGCAACAAAGTCAGACCTGCATCTGCTGGAGTTGCCAGCCTCAGTGATGATCTACAGCCAGTTACACGTGTTCGCAGTGGATCTATAGCTGCAATGCCATCTGTTTTGGCAAGATCAGGACGCTCAACCACAACGCCTGTCATCGACACTAAAACAAATATCGAAGCCATAATTGGAAGTGGTCAAGAGCAGGGTGGTACTAGTAGGCTGGCAACCACTCCAGATGCCGTTGGTGGTGTACATCGGTCAGGAATTCTCAAACCCAGAGCGGCTAGTGTACCCACTCTTGACAAGGGCTCTCTGGGATTGGACATAGGGACCAAATGCAATGGGAGGACACTCCTTAGTGCCAATACTATGGCTGCTGGCAGCAATAATACATCTAACACTAATGAAAGCACTTTGTACCAGAACACAAGCAGCAGTAATGCGGTTGTAACGTCACCCAATGATGTAGTGTTGGCATCCAAGAGCCCTCACAAAAGACCTGGCTTATGCACTGATTTAAGCCCAACACCTGTTAAAAAAGCCCACATCTCTGTGCTACCAGCTGGTGGATCTGATGGACAGAAGTCCGAAATAATGATCAAGCAATTTCCAAGATCATGTACTCCAATCAGGCCAGAAAGTGCACCTACAGCCATAGGCAAAGCTACTGCGGCTTCTGTCAGGAATACTGGCTTCCAGACAATTCGCAGGCCACAATGCATCTCCCAGGGAAGATGGGAAGGTGCTTCATCAGTAAGGGATTATAGAGTTCCCGTCACCTCTATATCAAGTCAGGATACATCAGTAGGGAATACCATGTTTCAGACTGTTAGCAGGCCTCGAAGCATCTCCCAAGGGAGATGGGAAGGATCTTCAACAGGAATCGAAGGTAGAGCTGAGGTCACACGTACTGTTAGTGCTCCAGGTCAAGCTTTGCTACAACAAGTAACAAAAAACTCACAGGATTTGCTAATAGACCAATCTGATGACTCTGCAGTATGTGAACTGAAGAGTGTGTTTTGGGATAGTGAACCACAAGATGGCACTCAACAACATCAAGAAGTTTATGGTCCGCAAATGATGTCTGAGCCAAAGCAAATGTCCACCCCAGTGATGGAGCATCTTCCTGCAATTGCTCAACCCTCTCCTGCCAACCAGCAGGCACAGATGAGTGACTATGGAACCCAGGCCAACGTTGGCTACTACCCCTTTAATGATGATGACATGACCCAGGATAGCATTGTCGAGGAACTTGTTCAAATGGAAGAGCAGATGAAAATTAACAATAGCATACAAAGTTTCAGCAACTGTGTGGATATTTCAATGCAAGACCAGCATCAAACCATGCAGACTACCATAATGTCTACTCTTCAGACTAACAACCTGTACTACAGCTCTGCTCATAGCAGAAGCACCCCAATCCAAACACCCACTCTGACACCTACTCCCACTTCCGAGATGATGGGAAACTGCCAGGGATTGATGCACGAAAGCCCCTGTTTGCGCCTAGTCCCCACCACTCCGGTCGACAGTGCTCTTGGAAGTAGTCGACAAACTCCTATTGGCACACCACACTCCAACTGCAGCAGTAGTGTCCCACCCAGCCCAGTGGAATGCAGGAACCCTTTTGCATTTACTCCGATTAACTCCAGCATCACTGGATACCACGACGGAAGTACTGTCTCCTCGAGCCCTGTCAAGCCCATGCAAAGACCAATGGCAACGCATCCAGATAAGACTAAACTGGAGTGGATGAACAGTGGGTACAATAACAGTGGTGGGAACTCTAACAACGGCATTAGCATTCTGCCCAGCTACCAAGACCTGGTAGATGACCACTTTCGAAAGCCTCATGCCTTTGCCATCCCGGGCCAGACCTGTCAGTCGCAAAGCAGACATCATGACATGCATATCAGCCGCTTGACACCCATTTCACCTGTCCAGCAGCAATTGGCAAGCATAGCTAGCCTCAACAAGACAGAGGGTTTTGCTGTCCCAGCACCCCTTGACAACAAAGCAAGCACCTCCTCCTCAGGGTCTGGAACGTTTCGTTGCCGCAGTGTTAGCCCGGCAGTCAGGCAGCGCAACTTAAGTGGGACTCAAGCTCCCAATGTTCCCCACTCTGTGGTCTCTCCTTTCAACTCACCTGTAACACCCGAAGTGCTAAACATCTTTTCTAACAGTGACCCTGATGCAAGTGTCAGCAGCATGGCACAGAGGAGTCAGTCCGTTCCAGTCACCGTGATGATGCAATCTGAAGTTCAACCCATGCAGTCAGGCCAGCAGATTAATACCAAAAACATCACCAATGTCCTCATCAGCAAAATGGATGGTGATGGAGATGATTCGGTACGTGGCCTCGGAATCAATAACATGCCGTCCAACTACACTGCCCGCATGAATCTCACCCAGATTCTGGAGACCACCACAGTGCCCAGCTTCCCTGGTAGTGCCAGCCACCAAGCTCTGATCTCACCTTGTTCATCAGCCTTTGAGTCCCAGAAGCCTGGTTACCTCATGAAAAATGCCAGGGAGGAGCCGATGAGTTTCTCTGTAGACGAAAGCCAAGCACAATCAGCCTCAGGGGAGCACCAGCCGCTACAACAGCAACAGCGCTTAGGTAGACGGCAGCTCCTTGGGCAGGAACAGCAGAGTCAGGCCATGCTGTTACCTCTACAGCAAAACCTCCAACAACATCAGCACCAGCAACCATTGGATTTAGACAGAACTGTTAAAGATCTTTTAAATGAGGAAAGCTTGAATGCTGGCTCACAGCTTGTGGGTCAAGGATCAGAGCTCAGTGCTGGGGGTTCAGAGTTTACCAGCGATATGCGACTAACCTCTGAGCTCACCGGTGGCATAAATGACTTAAATACATTGGACACCAACCTCCTTTTTGACCCTAGTCAACAGCAAGGACAATATGAAGACTCAACACTGGAAGAACTGAAGAATGACCCACTTTTTCAACAGATTTGCAGCGAGACTGTAAATTCTGCTGGCTTTGACTGGTTGGAGAGCAAAGACCAGGCAACAGTGGAAATGTTGGGTTAATTTGTGCTTTTTGGTTTGTTTTTATATTTGTATAGGTTTCTATGTATGTATTTTTGAAATCTCATCAATGTATGTATTCACCTCATTGTTGTGCACCACCTACTACAGTAAGCCCCTGGACGTCACGACACCGGTCCATATTGAAGTGCCAGGCTGAACAGAAATTATTGCGTATTCAAAATTGATGGGTTTTTATCTCGATGGTTAGTGCAATACAGTCTAACCAGGGAGTGCTGTCACATTTTGCCTCCTCTCACCACCAGTTTTGTAAAGAAAACACACATCAGAGCTTTACATAAGAAGTCATCAGAGAGCTTTTTTTATGCCTCCGCTGTTTCGTGCATTAATTTACGCAACTTTTATATAATCCTTTGAATGTTTTTTGCAGTCAAAGGGCATTGTATGGAAAATTGGAAAATAAGAATTTCTTTTTAACCCTTTATCTTAAAGAAAGATATTTGTATTTTGAGGTTACACCAGCTGTATGGGGAACTATACCTCATCTAATTAGCTTTTTTCCACTCTGTAAAGAAAATCGGTGCTTCCATGTGCAGTAAACCATAATAAGTGACAACTTTGAACATATTACCGTAACATCTATATTGTCCTTCAGTAAACAAAGAATAAGGGGAGATCACATCAACTTGGTTAAGCTTTCAGGTGATGCTTAATATTGAAATACAGCAATTTGCACCTGCAGCAGCTGTTCAGAAAGTAATTTATTGGCTCACATTACAAATTCTATTTGTGTGCAATAAGTAAGATACTGGTAAGTGATATTTGCAGCTTCTTTCTTATTGCCACTGTCAATTGGGAAGTAAGCAGCTACTTGCAAAAAATTGTTTTATGTTGTTATGATGGCTGATGAATAATGTTCAAAGTGAAAAAATTAGTGCACTTTTGCTATTTAAAGTTATATATGCTAAAGTTATATATGCTAATATAGGTTTCCCCAGTCTCTAGATTTAAAGAGATCATTCAGATTTTATCCCACAGAACAGGCTGGGATTTTTTTATACACAATCATTGAATAATAATGGCACTGGTTATTGCACTAGCTGGCACCTTTATATTGCATTTGCAATATGAATATGGCTGAGAAAAGGCCTCATTTTAAATGGAAGGGGGGAGGGGGGTAACTTAGTTACTGGTGAAACCAAAATGCCAAAGTGGATTATAGTTGTGGGGAAAAAAAAAAAAAATAGGACAGTTGTCAAAACTATTCCAGATGTTTGTTTTAGTGTCAACTATGCATTTATGAGGCCAAGAAAGAGATGATTAGCCACATTTTGACTTTGTATGGATTTCCCCCAATTGATGCTTGTCATTTAGCAGTTTGCATAAATGATATTCATTGACATATAAATATGCTCTCATGCACATGCCTCGTTTTGGCATTTTCAATGACTGTTTTCTACTTGAGCACTTCATTCAGGAACTTCTTTATGACATGCACTATTAAAGAGCCTGTACCCCTTAATCAAAATATTGTACCAGCTGTAAAAACATCAGGAAACTGAAATTACCCAGATCACATTACTA

Function

symbol description
rfx7 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
DNA-binding protein RFX7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_07900733_07907266.mRNA True 5817 mRNA 0.45 6 7900733 7908808

Neighbor

gene id symbol gene type direction distance location
CI01000026_07874837_07876094 CALL4, CALML4A, CALML4 coding upstream 24534 7874837 ~ 7876199 (+)
CI01000026_07872070_07873313 CLN6, CLN6A coding upstream 27376 7871575 ~ 7873357 (+)
CI01000026_07766716_07782894 BBOX1 coding upstream 117741 7766716 ~ 7782992 (+)
CI01000026_07763144_07765276 FIBIN, FIBINB coding upstream 135397 7762708 ~ 7765336 (+)
CI01000026_07716356_07721570 TIPIN coding upstream 179128 7716356 ~ 7721605 (+)
CI01000026_07911644_07954640 NA coding downstream 2836 7911644 ~ 7954640 (+)
CI01000026_07965621_07990576 SLC9A5 coding downstream 56768 7965576 ~ 7990643 (+)
CI01000026_08031599_08081760 PLEKHG4 coding downstream 122791 8031599 ~ 8081905 (+)
CI01000026_08096241_08097257 NA coding downstream 186755 8095563 ~ 8097604 (+)
CI01000026_08103907_08104974 NA coding downstream 195006 8103814 ~ 8105599 (+)
G130910 NA non-coding upstream 22965 7877354 ~ 7877768 (+)
G130857 NA non-coding upstream 85867 7803928 ~ 7814866 (+)
G130843 NA non-coding upstream 113816 7785163 ~ 7786917 (+)
G130865 NA non-coding upstream 148960 7751567 ~ 7751773 (+)
G130864 NA non-coding upstream 150266 7750257 ~ 7750467 (+)
G130894 NA non-coding downstream 13366 7922174 ~ 7926132 (+)
G130962 NA non-coding downstream 266453 8175261 ~ 8176018 (+)
G130986 NA non-coding downstream 294033 8202841 ~ 8203962 (+)
G130993 NA non-coding downstream 308142 8216950 ~ 8217316 (+)
G130994 NA non-coding downstream 308875 8217683 ~ 8218352 (+)
G130552 NA other upstream 804081 7095053 ~ 7096652 (+)
G128757 NA other upstream 1573948 6326196 ~ 6326785 (+)
G128601 NA other upstream 1908972 5983879 ~ 5991761 (+)
G128585 NA other upstream 1950611 5949813 ~ 5950122 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other upstream 3344416 4555776 ~ 4557613 (+)
G130967 NA other downstream 279566 8188374 ~ 8189073 (+)
CI01000026_08297901_08307596 CTRB1 other downstream 389765 8297857 ~ 8307629 (+)
G131077 NA other downstream 592600 8501408 ~ 8506787 (+)
G132667 NA other downstream 1659931 9568739 ~ 9569160 (+)
G133192 NA other downstream 2251011 10159819 ~ 10161961 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033873 rfx7a coding NC_007118.7 CM002891.2 34506795 ~ 34546833 (+)