G130993


Basic Information

Item Value
gene id G130993
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8216950 ~ 8217316 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU148963
CACATGAAGATCCCAAATTTTCTGAACTGTGTGTCCATTCCTCCGAGGGAAGGTTGTTCCGGGAATGTCCGCCCCTGTGTTCAGTACACCCTGTATATGCGCTGCTCTCAGTGAGAGCAGGTTGAGTTGGGCCCACTCTAGGATGGTTTTCGCTAGAGTGAAGAGGGTCTTTGAAGAGAGCCTGCCCTGGTGATTTATGAAGGACACCACCGTCATACTGTCTGATCTGACTAAGACATGGTGTCCCACCAGGAGAGGAAGGAAAGTTTGGAGAGCTTGATATACCGCCATCATTTCCAGACGGTTGATATGAAGCTTGCTTTCCAAGTGCTGAAGGCCAGATGGCCGTCGCACAGAGCTCCCCAAC

Function

NR:

description
PREDICTED: thrombospondin-3b-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148963 True 367 lncRNA 0.51 1 8216950 8217316

Neighbor

gene id symbol gene type direction distance location
CI01000026_08107438_08129873 ESRP2 coding upstream 86470 8107438 ~ 8130480 (+)
CI01000026_08103907_08104974 NA coding upstream 111351 8103814 ~ 8105599 (+)
CI01000026_08096241_08097257 NA coding upstream 119346 8095563 ~ 8097604 (+)
CI01000026_08031599_08081760 PLEKHG4 coding upstream 135045 8031599 ~ 8081905 (+)
CI01000026_07965621_07990576 SLC9A5 coding upstream 226307 7965576 ~ 7990643 (+)
CI01000026_08248451_08250136 DDX28 coding downstream 31055 8248371 ~ 8250221 (+)
CI01000026_08297901_08307596 CTRB1 coding downstream 80541 8297857 ~ 8307629 (+)
CI01000026_08313929_08318869 ATP6V0D1, ATP6V0D1.L coding downstream 94479 8311795 ~ 8318891 (+)
CI01000026_08421799_08434134 ZDHHC1 coding downstream 204367 8421683 ~ 8434193 (+)
CI01000026_08447474_08449558 TPPP3 coding downstream 230080 8447396 ~ 8450611 (+)
G130986 NA non-coding upstream 12988 8202841 ~ 8203962 (+)
G130962 NA non-coding upstream 40932 8175261 ~ 8176018 (+)
G130894 NA non-coding upstream 290818 7922174 ~ 7926132 (+)
G130910 NA non-coding upstream 339182 7877354 ~ 7877768 (+)
G130857 NA non-coding upstream 402084 7803928 ~ 7814866 (+)
G130994 NA non-coding downstream 367 8217683 ~ 8218352 (+)
G131025 NA non-coding downstream 24559 8241875 ~ 8242082 (+)
G131028 NA non-coding downstream 27583 8244899 ~ 8245152 (+)
G131007 NA non-coding downstream 77291 8294607 ~ 8297170 (+)
G130967 NA other upstream 27877 8188374 ~ 8189073 (+)
G130552 NA other upstream 1120298 7095053 ~ 7096652 (+)
G128757 NA other upstream 1890165 6326196 ~ 6326785 (+)
G128601 NA other upstream 2225189 5983879 ~ 5991761 (+)
G128585 NA other upstream 2266828 5949813 ~ 5950122 (+)
G131077 NA other downstream 284092 8501408 ~ 8506787 (+)
G132667 NA other downstream 1351423 9568739 ~ 9569160 (+)
G133192 NA other downstream 1942503 10159819 ~ 10161961 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 2853452 11075784 ~ 11079080 (+)

Expression


Co-expression Network