CI01000026_08421799_08434134 (ZDHHC1)


Basic Information

Item Value
gene id CI01000026_08421799_08434134
gene name ZDHHC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8421683 ~ 8434193 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_08421799_08434134.mRNA
ATTTAAATGGCAGGAGTGACAGAAGGAGGATCCCCTCTCATGGACGTCTGCAGTAAGAACTCCAACCGCACAGCCCCAGTGAGCGAGGGGGGACCCAGGAGAGCTGATGTGCCCCTATGCTCTCGGACCAATGGTTGGAGCTGGCCCCCGCACCCTTTCCAGCTCCTGGCCTGGCTGCTTTATCTCTACTTTGCTGTTACTGGCTTTGGCGTATTTGTGCCTTTGCTCCCCACACACTGGATCCCAGCCGGATATATTGTATCCTTGTTTTAGAGTTTGTCATGTGGCCTGCAATGAAGCTATTCCTGCACACATCTGCATGTTGTTATTATTATGCAGATTATAATGTCCGAGCTAAAAGTTATAAGGGACCCATGCCGGTGTTTGACCGCACCAAACATGCACACGTCATCGAGAACTGTCACTGCTACCTCTGTGAAGTAGATGTGGGCCCTAAATCAAAACACTGTAGTGCGTGTAATAAGTGTGTGGCAAGCTTTGACCACCACTGTCGATGGCTGAACAATTGTGTGGGCAGCAGAAACTACTGGCTTTTTCTCAATAGTGTGATTTCTGCTCTCCTGGGGATTGTTTTGGTTGTAGTTATGGCTAGTTATGTTTTTATAGAGTTCTTTTTGGACCCATCAAAGCTTCGATCTGACAAGCACTTTCAACAGGTAAGGAATGAATCTGTGGTGTGGTTTGTGTTTCTGCCGGTGGCTCCAGTCACCACAGCAGGTCCAGCCATTCCCGCTCTAGCAGGAGTCACCATTGCTCTGGGCCTACTGTCTGCACTTTTGCTGGGCCACTTACTCTGCTTCCACATATACCTCATGTGGAACAGACTTAGCACATATGAGTATATTGTGCGACAGCGGCATCGGCAAGAGGCCAGAGATTCTAGAAAGCCTCCTCCAGAAAATGAATCTGGGATTCCCAAGATGAATCTTATCAAGCAGCAGGTCAGTTATAGTGGGACACTCGGCTACACCAACCCTGAGATGGAGGTAGAGGATCCAACCGCCATGTGTTCCCAAGAAGGAACAGCGCATTACGGCAACGGTCGGATCAGAGGCTCGTCTGAGCACATGGGTGAAGAAGAGCTCCTCCCTGCTGTCTTAACAGAGCACAAAGCATCACCTCACCCTCACAAACCCACACAGAAAAAAAAGAGGAAAGTGCGCAAACTTGCAGCTGAGGTAAACAGTGACAGGTCCATTGACACCAGCACCAACAGAGGCATGCCAAAGACTTCTGCTGAGCAGGTGGTGTTAATAGTGGCGAAACAGTGTGTGAGTAGTTACCTTTGTGATCTGTGTCTGTGCTTTACACAAATAGAGTCCTCAGTAGCTGCCGCCACTGTGTCCTCCTCTCTTGGTCAACGCTTACCCTTCCCAGCATTTCCCTTGCGGGCCTCCCTCCCGCCTCTTGCACCAGTTCAAGCCGCTGGCCCCCCTGCTGAGTATCATTCTGACTCTGCAGAATCTCTGGAGGAGATCCCTGTAGCAATGGCACGGCTTGGCAGCGCAGCCCTGGCCGGAGCTCCGATCCCCACCTGTGCTACTACTGCTGCTGTTTCTGCCACCACCTATTCCTCTTCTCTCCAGTGTGCTTTGCCTTCCTCAGCAGCTGGACAAGCTTTACCCTCCCCTCAGCCCAGGACCAAGAGGAAAGCGGCCGTTCATAAAGCTGCAGAGCAGAGGTTTGAGATGGTGTCCCATAATCTGTCTTTGTTCGTGAGTCGAGAAAGCGGGGAGCCTGCCATGCCCCAAGAGGGCATTATCAAAGAAGAAAGTCCCCGTGTGGCAAAACGCAAACAGACAGGTAAAAAGAGAAATATGGAGGGCACAAAGCCCAACTCCAGATTAGGAACCCCGATGGTGTAGAGATTACATTAGAGAGACGCATCACTACTCATTGGCACTTGGTCGGTCTTGTTTTTCTA

Function

symbol description
zdhhc1 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be located in Golgi apparatus; endoplasmic reticulum membrane; and endosome membrane. Predicted to be integral component of membrane. Orthologous to human ZDHHC1 (zinc finger DHHC-type containing 1).

GO: NA

KEGG:

id description
K20027 ZDHHC1_11; palmitoyltransferase ZDHHC1/11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_08421799_08434134.mRNA True 1945 mRNA 0.51 10 8421683 8434193

Neighbor

gene id symbol gene type direction distance location
CI01000026_08313929_08318869 ATP6V0D1, ATP6V0D1.L coding upstream 102792 8311795 ~ 8318891 (+)
CI01000026_08297901_08307596 CTRB1 coding upstream 114054 8297857 ~ 8307629 (+)
CI01000026_08248451_08250136 DDX28 coding upstream 171462 8248371 ~ 8250221 (+)
CI01000026_08107438_08129873 ESRP2 coding upstream 291203 8107438 ~ 8130480 (+)
CI01000026_08103907_08104974 NA coding upstream 316084 8103814 ~ 8105599 (+)
CI01000026_08447474_08449558 TPPP3 coding downstream 13203 8447396 ~ 8450611 (+)
CI01000026_08454661_08461606 NA coding downstream 20468 8454661 ~ 8461921 (+)
CI01000026_08474877_08483134 NA coding downstream 40684 8474877 ~ 8483268 (+)
CI01000026_08944583_08947981 NA coding downstream 510333 8944526 ~ 8947993 (+)
CI01000026_08950735_08960908 NA coding downstream 516470 8950663 ~ 8961146 (+)
G131088 NA non-coding upstream 10799 8410642 ~ 8410884 (+)
G131015 NA non-coding upstream 88968 8332107 ~ 8332715 (+)
G131048 NA non-coding upstream 109934 8311533 ~ 8311749 (+)
G131046 NA non-coding upstream 111909 8309566 ~ 8309774 (+)
G131098 NA non-coding downstream 19820 8454013 ~ 8454240 (+)
G131071 NA non-coding downstream 52278 8486471 ~ 8497992 (+)
G131108 NA non-coding downstream 86581 8520774 ~ 8521442 (+)
G131859 NA non-coding downstream 136909 8571102 ~ 8571332 (+)
G131861 NA non-coding downstream 138105 8572298 ~ 8572531 (+)
G130967 NA other upstream 232610 8188374 ~ 8189073 (+)
G130552 NA other upstream 1325031 7095053 ~ 7096652 (+)
G128757 NA other upstream 2094898 6326196 ~ 6326785 (+)
G128601 NA other upstream 2429922 5983879 ~ 5991761 (+)
G131077 NA other downstream 67215 8501408 ~ 8506787 (+)
G132667 NA other downstream 1134546 9568739 ~ 9569160 (+)
G133192 NA other downstream 1725626 10159819 ~ 10161961 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 2636575 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 2810740 11241496 ~ 11246204 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033885 zdhhc1 coding NC_007118.7 CM002891.2 35191220 ~ 35212947 (+)