CI01000026_08313929_08318869 (ATP6V0D1, ATP6V0D1.L)


Basic Information

Item Value
gene id CI01000026_08313929_08318869
gene name ATP6V0D1, ATP6V0D1.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8311795 ~ 8318891 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_08313929_08318869.mRNA
GTATAAAATAATCAGATGGCTTCCAAACTCACTGGAGGGTCTCACTGTCAGATTCAGCAGTGGCACAGGAGTAATTATTTCACAATGTCTCAGAAAGCAAAGCAGTGATAAAGGAGTCAGTATCAAAAGGATATTAAATGACCTGCTTAGTTTATTTCATCATTTTTTCTTCAGTTAGTGGAAGTCACATTTCCAGCCTCACTGAGCAGAGATGCTAACTGTCCCTTTTGCGCAACCTGGCAACCTTTGCGAATGCGTTTCACATAGGCTACTTAAAGTCCTCATGAATTCAAAATTGAAGTTTTTTACCTTTTAGTATGAACATGTTAGCCTTACTGTTATCTATAAGCTAGTGTACACCAAAACAATGACAAAATTCGCATTTAGAAGATATAAGCATTCAAAACTTATAGGCCCGGTTTCACAGACAGGGTTTAGACTATAAGCCAGGATTAGGCCTTAGTTCAATAAGGACATTTAAGTAGCTTTCATAAACGTACACTAGCATGGCACTGACATATTTTAAGATGTGTCAGTACAAGTTGCTTTCAGTTAAAAAAGCTCAAACATTCATTTTAGTCTAGGACTAGCTTAAGCCTTGTCTCTGAAACCGGAGGACAGTCTCTCACTTCCGCCATTATGGATCAATTTTGATGACTTCACTCTGCACTTCAGCCTCTCATCAGATTTTCTGTCCAATCAAATGCTAGAGATTAGGAGAACACTGCGGCTTTAAGCTCAATGGCTCTGTCTGAGCTGTGATAAACAAAACGCCATTGGCTATTTTTTAAAAGGGGAGGAGCTGTTCGATATGTCCTGCCCTGTCTTCCTGTTTCATTGGGAAATGACGTCAACACATTGAATAACGCTACGTGTTTCAAGGCACTTCAGTGGGCCTTTAAAAGAATGTCATGCACAATCATTTCGACTTATTTTTGACATTTTTTGGTAACAAGTTCACAATATAATTAGTTTTGATGACTTTGCAATAAATATAAAATGTTACGAATAGTAGTAATAATTAAAAATTAGTGCATATTTCCTTTTTTGTAGGTAAGGTAACAAAAACCCCTGACATGGACTGGATAAATTTAGTAGAAAGATTACCCCTCAAAAAAGTCAGTAGCCTCACCGGATCGGCGCCAAGCAAGCAATAATGTCATTTTATTTAGTCTACTAAAACAAAAAATATCTTAGAGACCTCCCACAAAGCACTAGTGCCTTTAATTAATGAAGAAAAAAGATATATATATATATATATATATATATATATATATATGTTTGTATGTATGTATATGTTAGTTGATTTGTAAGGATGGTGGATGGGAGCATAGCCTACTGGAAAAATAATAAATATAATAAAAAAAAATAATTTTGCTAAAGGACAAACAAAACATTTACATCCAAAGATAATTTAAACAAACATGTGGACTTTGCGAATGAGGTTTGAGCTCTTTGCTTCTGTTCGGAGGGCTGGTCTGAGATCACACATAGTCAGATGCTCAGTCACATGAGTGTGTGTGTGCATCCGGGTATTGCAACTTCCCTCATTCAGTTATGGGTGGTCCGATTCATTTCCACGAATCGGTTCTTTCGAACAGTTCGATTTAAGATTCTTGCTTCAAAATGATTCTCAGATGTTGTTTTACGTCATGTCTATTGCTATGTATTACTATTTTCACGATTAAATTGTATTAATAATTGTTTATTGTTATGTATTATTGTGTTGTAGTGTCCCAGTTTAGTTTATTGCAGCTAGTATTCAGCTCATAATAGCCTACATAAAGTCATTTCGAAATTACAATTTGCATTTACAATAAACAAAATCAAAATGACTTTACATCTTTCGGGTAAAAAAAAAAATGCGATTTTACTAAAACCAACTGTTTTGTTTGTTGATTAAACTGTCATACAATCAAGTTGTAAACAATCCAGTAGCTATTAATCTTTGTAGAAATTACATTGAATCATTCAGACCTGTTTTGTGAATCTGTTCAAATATTTTATTAAAAAGATCCGACTCTGAAGAACAAATTGTTCACGAATCGGACCGCACTGTCAGTCAAGACTGCGTTATAGAGCTACATCTTGCATTTTCTTTAGCTAGTACACAGTTAGTCTTATATTTTTCACCATGCCTTTCTCTGAATTATATTTTAATGTGGATAATGGTTATCTGGAGGGGCTGGTGAGAGGTTTTAAGGCTGGTATTTTATCTCAGGCGGATTATTTGAACCTTGTTCAGTGTGAAACTCTGGAAGACCTGAAGCTTCATTTGCAGAGCACTGACTATGGAAGCTTCCTGGCCAATGAAGCTTCCCCCCTCACTGTCTCCGTCATTGATGACAAGCTGAAAGAGAAGATGGTGGTTGAGTTTCGCCATATGAGGAACCAGTCTTATGAGCCTCTGGCCAGCTTCATGGATTTCATCACATATAGCTATATGATTGACAATGTCATTTTGCTGATCACTGGAACTCTGCATCAGCGGGCCATCTCTGAGCTGGTGCCCAAGTGCCATCCACTTGGCAGCTTTGAACAGATGGAGGCCGTTAACATTGCCCAGACTCCAGCAGAGCTCTATAATGCCATCCTAGTGGATACACCACTTGCTGCTTTCTTTCAGGACTGCATCTCTGAGCAGGATTTGGATGAGATGAACATTGAAATAATTCGCAACACCCTTTACAAGGCTTATCTAGAAGCTTTCTACAAGTTCTGTTCCTCATTGGGTGGAACAACTGCAGACACCATGTGTCCAATTCTGGAGTTTGAGGCAGACAGAAGGGCTTTCATCATTACCATTAACTCCTTTGGTACGGAGCTCTCCAAAGAAGACAGAGCGAAACTTTTCCCTCACTGTGGCAAGCTCTACCCAGAGGGTCTCGCACAGCTAGCCCGTGCGGATGATTACGAGCAGGTCAAAGCTGTGGCTGAATACTACCCTGAATACAAGCTTCTCTTTGAGGGTGCTGGCAGCAACCCAGGAGACAAAACCCTTGAGGATCGCTTTTTTGAACATGAGGTGAAACTTAATAAGCTGGCCTTCCTGAATCAGTTTCATTTCAGCGTGTTCTATGCCTATGTCAAATTGAAGGAACAAGAGTGCCGGAACATTGTGTGGATTGCAGAGTGTATCGCCCAAAGACACCGGGCTAAGATTGACAACTACATCCCCATATTCTAATGGTATATAATATCAGTCTTGA

Function

symbol description
atp6v0d1 Predicted to enable proton transmembrane transporter activity. Involved in left/right axis specification. Acts upstream of or within several processes, including animal organ development; pigment granule organization; and response to copper ion. Predicted to be located in lysosome and membrane. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex and vacuolar proton-transporting V-type ATPase complex. Predicted to be active in early endosome. Predicted to colocalize with centrosome. Is expressed in several structures, including digestive system; integument; nervous system; pleuroperitoneal region; and presumptive retinal pigmented epithelium. Orthologous to human ATP6V0D1 (ATPase H+ transporting V0 subunit d1).

GO:

id name namespace
GO:0008021 synaptic vesicle cellular_component

KEGG:

id description
K02146 ATPeV0D, ATP6D; V-type H+-transporting ATPase subunit d

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_08313929_08318869.mRNA True 3209 mRNA 0.39 8 8311795 8318891

Neighbor

gene id symbol gene type direction distance location
CI01000026_08297901_08307596 CTRB1 coding upstream 4166 8297857 ~ 8307629 (+)
CI01000026_08248451_08250136 DDX28 coding upstream 61574 8248371 ~ 8250221 (+)
CI01000026_08107438_08129873 ESRP2 coding upstream 181315 8107438 ~ 8130480 (+)
CI01000026_08103907_08104974 NA coding upstream 206196 8103814 ~ 8105599 (+)
CI01000026_08096241_08097257 NA coding upstream 214191 8095563 ~ 8097604 (+)
CI01000026_08421799_08434134 ZDHHC1 coding downstream 102792 8421683 ~ 8434193 (+)
CI01000026_08447474_08449558 TPPP3 coding downstream 128505 8447396 ~ 8450611 (+)
CI01000026_08454661_08461606 NA coding downstream 135770 8454661 ~ 8461921 (+)
CI01000026_08474877_08483134 NA coding downstream 155986 8474877 ~ 8483268 (+)
CI01000026_08944583_08947981 NA coding downstream 625635 8944526 ~ 8947993 (+)
G131048 NA non-coding upstream 46 8311533 ~ 8311749 (+)
G131046 NA non-coding upstream 2021 8309566 ~ 8309774 (+)
G131007 NA non-coding upstream 14625 8294607 ~ 8297170 (+)
G131028 NA non-coding upstream 66643 8244899 ~ 8245152 (+)
G131015 NA non-coding downstream 13216 8332107 ~ 8332715 (+)
G131088 NA non-coding downstream 91751 8410642 ~ 8410884 (+)
G131098 NA non-coding downstream 135122 8454013 ~ 8454240 (+)
G131071 NA non-coding downstream 167580 8486471 ~ 8497992 (+)
G131108 NA non-coding downstream 201883 8520774 ~ 8521442 (+)
G130967 NA other upstream 122722 8188374 ~ 8189073 (+)
G130552 NA other upstream 1215143 7095053 ~ 7096652 (+)
G128757 NA other upstream 1985010 6326196 ~ 6326785 (+)
G128601 NA other upstream 2320034 5983879 ~ 5991761 (+)
G131077 NA other downstream 182517 8501408 ~ 8506787 (+)
G132667 NA other downstream 1249848 9568739 ~ 9569160 (+)
G133192 NA other downstream 1840928 10159819 ~ 10161961 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 2751877 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 2926042 11241496 ~ 11246204 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location